1 5' 3' | 2 5' 3' | 3 5' 3' |
CATTAGCTGCCGAGAAGCTAAAGAACATGGGTCCAGTAACAAAAAATGAATGGGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGGgtaagacttttctttttaaagagaattttccccatgaattgacttgcaatctgtaactaaacttttggtaactgaacttttgtatttaatttcaccgttc...
species | Zea mays |
transcript | GRMZM2G086258_T02 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGGGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGG GGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAATEST: gi|13249892|gb|BG360797.1|BG360797
genomic: TGGGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGGgtaagacttt ... aatatggcagGGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAAT
EST: TGGGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGG GGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAATEST: gi|87156789|gb|DY401578.1|DY401578
genomic: TGGGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGGgtaagacttt ... aatatggcagGGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAAT
EST: ATGCTTCTTGCAGTCTCACTATGGATTTTTGG GGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAATEST: gi|76927079|gb|DV171139.1|DV171139
genomic: ATGCTTCTTGCAGTCTCACTATGGATTTTTGGgtaagacttt ... aatatggcagGGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAAT
EST: GGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGG GGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAAT
genomic: GGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGGgtaagacttt ... aatatggcagGGAAACTATTGGCGTATCCAGCGTTGTTGCTGCAATGATTGGACTCTCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTAGCTGCCGAGAAGCTAAAGAACATGGGTCCAGTAACAAAAAATGAATGGGTCATGATTGGGACGATGCTTCTTGCAGTCTCACTATGGATTTTTGGgtaagacttttctttttaaagagaattttccccatgaattgacttgcaatctgtaactaaacttttggtaactgaacttttgtatttaatttcaccgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagagaa