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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTGATTTGAGTGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAGgtatgcactggcgttattactctactttttgctggtatcaacagttacttacacgagaattttttttttctcgtaacttgcgcag

Basic information

species Zea mays
transcript GRMZM2G086052_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086052_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g40620.2 (Oryza sativa), 5'ss of exon 9
AAACACAAGTTTGTGGACATATTAGACGATCCTGGCTCCGCTGATTTGAGTGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAGgtatgcactggcgttattactctactttttgctggtatcaacagttacttacacgagaattttttttt-------tctcgtaacttgcgcag
|| |||||||||||  ||||||| ||  | ||||| || || ||| ||||||| || ||||||||||| || ||||  | ||||||  |||||||||||||| ||||| |   |  | | ||  |||| |||| || |      |     | || |  |||| ||  |       ||| | |  ||  ||||
AAGCACAAGTTTGTACACATATTGGATAACCCTGGTTCAGCCGATCTGAGTGCTTATGTTGATTTTGCATCAATCAGACACTCCGCTAAGGAAGCTTCAGgtttgcacagatatcttaaatc--ctttctgcttgtttttctcat-gtccagacaaacatttcttactaggtctgtcttgaactttctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76924986|gb|DV170229.1|DV170229
EST:     CCGAGGAAGCTTCAG                         ACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC
genomic: CCGAGGAAGCTTCAGgtatgcactg ... acttgcgcagACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC
EST: gi|60343136|gb|DN210109.1|DN210109
EST:     TGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAG                         ACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC
genomic: TGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAGgtatgcactg ... acttgcgcagACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC
EST: gi|71772607|gb|DR970535.1|DR970535
EST:     GCCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAG                         ACGATATCTCGGTCCATGGGCCAAGGACGCAGTCCCAGTTCCTGGGTTCTC
genomic: G-CCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAGgtatgcactg ... acttgcgcagACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC
EST: gi|211258233|gb|FL463465.1|FL463465
EST:     TGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAG                         ACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC
genomic: TGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAGgtatgcactg ... acttgcgcagACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC
EST: gi|91048588|gb|EB159006.1|EB159006
EST:     TGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAG                         ACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC
genomic: TGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAGgtatgcactg ... acttgcgcagACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC
EST: gi|116818692|gb|EC861740.1|EC861740
EST:     TGCCTACGTTGATTTCGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAG                         ACGATATCTCAGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC
genomic: TGCCTACGTTGATTTTGCTTCGATCAAGCGCTCCGCCGAGGAAGCTTCAGgtatgcactg ... acttgcgcagACGATATCTCGGTCCATGGGCCAATGACGCAGTCCCAGTTCCTGGGTTCTC