1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tttatatttccgaatcaggtagtataatcatgtgaacattactgttgtaatgtcactacattgaaacaatttgttttgatccttcccttgtatggtctagATTCCAAGAGAAATAAGCATTGAATGCGGTGACACATCAGATGAAGTAAGAAATGACGTTGAAGGAATGAG
species | Zea mays |
transcript | GRMZM2G085836_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTGGCTTCTGGAACATGAAAGTGACCCAGATATTGATCGGCTACCACTG GTTCCAAGAGAAATAAGCATTGAATGCGGTGACACATCAGATGAAGTAAGAEST: gi|211529593|gb|FL367669.1|FL367669
genomic: ACTGGCTTCTGGAACATGAAAGTGACCCAGATATTGATCGGCTACCACTGgtaggtgatt ... tatggtctagATTCCAAGAGAAATAAGCATTGAATGCGGTGACACATCAGATGAAGTAAGA
EST: ACTGGCTTCTGGAACATGAAAGTGACCCAGATATTGATCGGCTACCACTG GTTCCAAGAGAAATAAGCATTGAATGCGGTGACACATCAGATGAAGTAAGAEST: gi|160481418|gb|EY254532.1|EY254532
genomic: ACTGGCTTCTGGAACATGAAAGTGACCCAGATATTGATCGGCTACCACTGgtaggtgatt ... tatggtctagATTCCAAGAGAAATAAGCATTGAATGCGGTGACACATCAGATGAAGTAAGA
EST: ACTGGCTTCTGGAACATGAAAGTGACCCAGATATTGATCGGCTACCACTG ATTCCAAGAGAAATAAGCATTGAATGCGGTGACACATCAGATGAAGTAAGA
genomic: ACTGGCTTCTGGAACATGAAAGTGACCCAGATATTGATCGGCTACCACTGgtaggtgatt ... tatggtctagATTCCAAGAGAAATAAGCATTGAATGCGGTGACACATCAGATGAAGTAAGA
tgtaatgtcactacattgaaacaatttgttttgatccttcccttgtatggtctagATTCCAAGAGAAATAAGCATTGAATGCGGTGACACATCAGATGAAGTAAGAAATGACGTTGAAGGAATGAG
ttttgat putative branch site (score: 8)
tccttcccttgtat CT-rich tract
aaacaatttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatatttccgaatcaggtagtataatcatgtgaacattactgttgtaatgtcactacattgaaacaatttgttttgatccttcccttgtatggtctagATTCCAAGAGAAATAAGCATTGAATGCGGTGACACATCAGATGAAGTAAGAAATGACGTTGAAGGAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - catgtga
- - - - - - - - - - - - - - - - - - - - -ctgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - -cactaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaat