Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211114494|gb|FL397754.1|FL397754EST: CGCCGTCGTCGAAGCCGGCCAAGTCCGGTGGTGGCAAGCAAAAGAAGAAG AAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
genomic: CGCCGTCGTCGAAGCCGGCCAAGTCCGGTGGTGGCAAGCAAAAGAAGAAGgtgacccttc ... ggttttgcagAAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
EST:
gi|211301114|gb|FL396192.1|FL396192EST: GCTCGTCGTCGAAGCCGGCCAAGTCCGGTGGTGGCAAGCAAAAKAAGAAG AAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
genomic: GC-CGTCGTCGAAGCCGGCCAAGTCCGGTGGTGGCAAGCAAAAGAAGAAGgtgacccttc ... ggttttgcagAAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
EST:
gi|211439670|gb|FK960515.1|FK960515EST: CGCCGTCGTCGAAGCCGGCCAAGTCCGGTGGTGGCAAGCAAAAGAAGAAG AAGTGGAGCAAGGG
genomic: CGCCGTCGTCGAAGCCGGCCAAGTCCGGTGGTGGCAAGCAAAAGAAGAAGgtgacccttc ... ggttttgcagAAGTGGAGCAAGGG
EST:
gi|9952372|gb|BE638955.1|BE638955EST: CGCCGTCGTCGAAGCCGGCCAAGTCCGGTGGTGGCAAGCAAAAGAAGAAG AAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
genomic: CGCCGTCGTCGAAGCCGGCCAAGTCCGGTGGTGGCAAGCAAAAGAAGAAGgtgacccttc ... ggttttgcagAAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
EST:
gi|211459128|gb|FL410726.1|FL410726EST: CGCCGTCGTCGAAGCCGGCCAAGTCCGGTGGTGGCAAGCAAAAGAAGAAG AAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
genomic: CGCCGTCGTCGAAGCCGGCCAAGTCCGGTGGTGGCAAGCAAAAGAAGAAGgtgacccttc ... ggttttgcagAAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
EST:
gi|161589886|gb|EY962673.1|EY962673EST: CGGTGGTGGCAAGCAAAAGAAGAAG AAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
genomic: CGGTGGTGGCAAGCAAAAGAAGAAGgtgacccttc ... ggttttgcagAAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
EST:
gi|29543869|gb|CB604249.1|CB604249EST: GCCGTCGTCGAAGCCGGCCAAGTACCGGTGGTGGCAAGCAAAAGAAGAAG AAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
genomic: GCCGTCGTCGAAGCCGGCCAAGT-CCGGTGGTGGCAAGCAAAAGAAGAAGgtgacccttc ... ggttttgcagAAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
EST:
gi|166502763|gb|EG164293.1|EG164293EST: AAAAGAAGAAG AAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
genomic: AAAAGAAGAAGgtgacccttc ... ggttttgcagAAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctggaggtgcagcttcttcgggttctcacggcactcgttcctgttggttttgcagAAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTCGACCAGGCTACCTACGACAAGCTGCTCTCGGAGGTGCCCAAGTACAAGC
ttctcac putative branch site (score: 2)
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgacccttctctcctactggctcgtctcttcgatttgctggaggtgcagcttcttcgggttctcacggcactcgttcctgttggttttgcagAAGTGGAGCAAGGGAAAGCTAAAGGAGAAGGTAAACAACGCGGTGCTGTTCGACCAGGCTACCTACGACAAGCTGCTCTCGGAGGTGCCCAAGTACAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT