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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttgcttttgatgtgcagcctaaatcctgaatgatacagttatttacatatctgaaaccttctgcagACTGCTGTGCAATCAAAAGGACTGAGGGATGATACCACCTGTATTGTTGTTGATATAATAGCAGAGAAAACCAACCCTTCCATGCCACTTCCTAGAAGGC

Basic information

species Zea mays
transcript GRMZM2G081359_T03
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G081359_T01 (Zea mays), 3'ss of exon 5
lower sequence: AT1G47380.1 (Arabidopsis thaliana), 3'ss of exon 7
--------------gtaacttgcttttgatgtgcagcctaaatcctgaatgatacagttat-----ttacatatctgaaaccttc-tgcagACTGCTGTGCAATCAAAAGGACTGAGGGATGATACCACCTGTATTGTTGTTGATATAATAGCA--GAGAAAACCAACC-CTTCCATGCCACTTCCTAGAAGGC
               ||  ||  ||| ||| |     ||| ||  |   |  | |  ||||      |  |||| | |   || | | |||   ||||||     ||||||  |  | |||||||| ||||||||||||||||||||| |  ||     ||||||  |  ||||| |||| | ||| | ||   
gtatagtatctgaattactttattttagatatattctctacatattctttcttgcctttatagtaccttgatattttattactccatacagGAAGCTGTGGGTAAAAAAGGTATTCGTGATGATACAACCTGTATTGTTGTTGATATATTGCCACTAGAAAAACCGGCTGCTTCCGTGCCGCCTCCAAAAA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166578845|gb|EG124632.1|EG124632
EST:     ACTGTTCACGTGAACTTCCTCCAGTGCCTGCAGCTGAGCAAATCGTTAAA                         ACTGCTGTGCAATC
genomic: ACTGTTCACGTGAACTTCCTCCAGTGCCTGCAGCTGAGCAAATCGTTAAAgtaacttgct ... ccttctgcagACTGCTGTGCAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcagcctaaatcctgaatgatacagttatttacatatctgaaaccttctgcagACTGCTGTGCAATCAAAAGGACTGAGGGATGATACCACCTGTATTGTTGTTGATATAATAGCAGAGAAAACCAACCCTTCCATGCCACTTCCTAGAAGGC
     gcctaaa  putative branch site (score: 3)
                                             ccttctgc  putative PPT
                         agttatttacatat  TA-rich tract