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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcccagagtccgctctctgtccactaactagtaactaccgagcgaatggagtgctcggttgttcacggtcaccgcgcccgcgcgcgcgcatcagatcttcagcaagcaaagcaagcaagcattcgctcacgcatccacgcttgttgcagGGCTCAGGTGGTGGGGTGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCTTCCAGCAGCAGCAGGCGGGCGCCAAGGGCAAGCCAGCGGCGGCGGATGAG

Basic information

species Zea mays
transcript GRMZM2G079957_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079957_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os12g40900.1 (Oryza sativa), 3'ss of exon 1
gtgagtcccagagtccgctctctgtccactaactagtaactaccgagcgaatggagtgctcggttgttcacggtcaccgcgcccgcgcgcgcgcatcagatcttcagcaagcaaagcaagcaagcattcgc-tcacgcat-ccacgcttgttgcagGGCTCAGGTGGTGGGGTGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCTTCCAGCAGCAGCAGGCGGGCGCCAAGGGCAAGCCAGCGGCGGCGGATGAG
                                                | |   | |     ||| |||   |||  ||   |||  ||| |||    |||         ||| ||| |||    || ||  ||  |  | |  |   || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |  |  | ||    | ||| |||||||  || |||| |  | |
------------------------------------------------gtaattaatatcaagttcttcttcgtcttcgtcgccgt-cgc-cgccatggat--------ggcagagctagctctgatacgtgtcgtgtttgctgctgctgctgcagGGCGCAGGTGGTGGGATGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCCTCCAGCCGACGACGACGACGACGAAGAGCAAGCCGCCGCCGGCTGCCGCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttcagcaagcaaagcaagcaagcattcgctcacgcatccacgcttgttgcagGGCTCAGGTGGTGGGGTGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCTTCCAGCAGCAGCAGGCGGGCGCCAAGGGCAAGCCAGCGGCGGCGGATGAG
                             cgctcac  putative branch site (score: 3)