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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGGCCCAGAAGGTGGCGGCGCCGCCGCCGTCCACGCCCAGGGGCAAGAAGCGCGACGGCGTCAGCGGCGGGATCGACGCCGCGCCGCCGGCCGCCAAgtgagtcccagagtccgctctctgtccactaactagtaactaccgagcgaatggagtgctcggttgttcacggtcaccgcgcccgcgcgcgcgcatcagatcttcagcaagcaaagcaagcaagcattcgctcacgcatccacgcttgttgcag

Basic information

species Zea mays
transcript GRMZM2G079957_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G079957_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g40900.1 (Oryza sativa), 5'ss of exon 1
GGCAGGCCCAGAAGGTGGCGGCGCCGCCGCCGTCCACGCCCAGGGGCAAGAAGCGCGACGGCGTCAGCGGCGGGATCGACGCCGCGCCGCCGGCCGCCAAgtgagtcccagagtccgctctctgtccactaactagtaactaccgagcgaatggagtgctcggttgttcacggtcaccgcgcccgcgcgcgcgcatcagatcttcagcaagcaaagcaagcaagcattcgctcacgcatccacgcttgttgcag
            ||| |||||||||||||||||| |||||||||| |   |   || |  ||| |                 | ||||| ||   |||   | || || |||    || | | | || |   | ||||| ||        ||  ||| ||   | ||   || || |||   |||| |  |     |||| ||  |||     |  |  |   |  || |||   ||  |  |           
------------AGGAGGCGGCGCCGCCGCCGTCGACGCCCAGGGCCGGAA---GCAAGCGCGCC-----------------CTCGCCGGCGA--GCCTGATCAGGCCAAGATCAAGCCCGCCG-CCGCCGCCAAgtaattaat------atcaagttcttcttcgtcttcg-tcgccgtcgccgc-catggatggcagagct--agctc-tgatacgtgtc-gtgtttgctgctgctgctgcag---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211478766|gb|FL264063.1|FL264063
EST:     AAGCGCGACGGCGTCAGCGGCGGGATCGACGCCGCGCCGCCGGCCGCCAA                         GGCTCAGGTGGTGGGGTGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCTT
genomic: AAGCGCGACGGCGTCAGCGGCGGGATCGACGCCGCGCCGCCGGCCGCCAAgtgagtccca ... cttgttgcagGGCTCAGGTGGTGGGGTGGCCGCCGGTGAGGTCGTACAGGAAGAGCTGCTT