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gtaaacccatggccaggaaaataaacatattttgaaaatcaagtatttgtagagttttgctgactaaatgatttgacggcctgtacagGCAGCATATTTCTCTTCGACTCGTTTTAAGAGGAAGGATAAAGGAACTAATATGCTACTT
species | Zea mays |
transcript | GRMZM2G079658_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAGGTTGTTGTGGAGGTTTGGCCTCCTTGAACATTTGTTGCCCTTTCAG GCAGCATATTTCTCTTCGACTCGTTTTAAGAGGAAGGATAAAGGAACTAATEST: gi|71440866|gb|DR821916.1|DR821916
genomic: TGAGGTTGTTGTGGAGGTTTGGCCTCCTTGAACATTTGTTGCCCTTTCAGgtaaacccat ... gcctgtacagGCAGCATATTTCTCTTCGACTCGTTTTAAGAGGAAGGATAAAGGAACTAAT
EST: TGAGGTTGTTGTGGAGGTTTGGCCTCCTTGAACATTTGTTGCCCTTTCAG GCAGCATATTTCTCTTCGACTCGTTTTAAGAGGAAGGATAAAGGAACTAAT
genomic: TGAGGTTGTTGTGGAGGTTTGGCCTCCTTGAACATTTGTTGCCCTTTCAGgtaaacccat ... gcctgtacagGCAGCATATTTCTCTTCGACTCGTTTTAAGAGGAAGGATAAAGGAACTAAT
gaaaatcaagtatttgtagagttttgctgactaaatgatttgacggcctgtacagGCAGCATATTTCTCTTCGACTCGTTTTAAGAGGAAGGATAAAGGAACTAATATGCTACTT
taaatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacccatggccaggaaaataaacatattttgaaaatcaagtatttgtagagttttgctgactaaatgatttgacggcctgtacagGCAGCATATTTCTCTTCGACTCGTTTTAAGAGGAAGGATAAAGGAACTAATATGCTACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA