Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtattgaaggttctgatggtttcatatgcattattattacagctacttgtgctgtgggcatagttgaaattcatcccaaaatacagcaagctgtttagctttatcataagctagcagcctagcacagaagttggggaaataatatgtactcctgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCTAGCGCGGCAAATGCGATCGTCTAAAGGAAGCAGTTTGTCGA

Basic information

species Zea mays
transcript GRMZM2G078396_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G078396_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g56960.1 (Oryza sativa), 3'ss of exon 3
gtatagtattgaaggttctgatggtttcatatgcattattattacagctacttgtgctgtgggcatagttgaaat-tcatcccaaaatacagcaagctgtttagctttatcataagctagcagcctagcacagaagttggggaaataatatgtactcctgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCTAGCGCGGCAAATGCGATCGTCTAAAGGAAGCAGTTTGTCGA
                                                |      ||| |   | |  ||||||| |  | | | || ||    |  ||  |||||| |  || |||  |   |||   |                |||||| ||| |  || ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||  |||||||    |  |
------------------------------------------------tgacca-gctatttcctttcttgaaatcttgtactacaaaactaataa-tgcatagcttcacgattagcctg--accttata----------------aatatgcacttccatgatgcagGTTCTGCCATCACTGGACCTATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCAAGTGCAGCAAATGCGATCGTCTAATCGAAGCAGCCATTGAA

upper sequence: GRMZM2G078396_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT3G04400.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatagtattgaaggttctgatggtttcatatgcattattattacagctacttgtgctgtgggcatagttgaaattcatcccaaaatacagcaagctgtttagctttatcataagctagcagcctagcacagaagttggggaaataa-tatgtactcctgtgctgc-agGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCTAGCGCGGCAAATGCGATCGTCTAAAGGAAGCAGTTTGTCGA-
                                                                      ||| ||           |   |||      |  | |  | ||||   || ||  |   |   |  |   |   || | | |||  |    ||     ||| ||||| |||||||| || |||||||||||||| |||||||| ||||| || || || || || || || || ||||| ||| | ||||      ||   
---------------------------------------------------------------------agaagtttgatatggggcaactcaaagccaatctcgtagtgataaatcagtagtatcatatttacttgtagctgatgagtctgttgtgtgatgtaattagGATCTGCTATCACTGGACCAATCGGAAAGGAGTGTGCTGATCTGTGGCCAAGAATCGCAAGTGCTGCGAACGCCATCGTTTAA-GCAAGCTTGAGATCTCT

upper sequence: GRMZM2G078396_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S280_69V6.1 (Physcomitrella patens), 3'ss of exon 3
--------gtatagtattgaaggttctgatggtttcatatgcattattattacag--ctacttgtgctgtgggcatagttg--aaattcatcccaaaatacagcaagctgtttagctttat-cataagctagcagcctagcacagaagttgggga---aataatatgtactcctgtg----ctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCTAGCGCGGCAAATGCGATCGTCTAAAGGAAGCAGTTTGTCGA
         |||     | ||   |||  ||   ||| || | || |    | ||  | | ||      || | ||  |||  | ||  ||  ||   ||       ||  |  |  |  |    | | ||  |   | |    ||   |   ||   | | ||| ||  |   |       |||||||||||| |||||||| || || || ||||||||||| ||| | ||||| ||||||||||| || || ||||| || |||| | || |  ||||     |
gtacgcagatatttccctcaaatatctt-tgacgtcagattcgttttagcaaaagatccagttagcgaatgagaatgattggcagatatatgtcatcgtatgttgttcttatcggaatgttgtgcacgttatgacttttgggatgagcctactgatttactgataggttttttggcaacttttgcagGTTCTGCTATCACTGGTCCTATTGGGAAGGAGTGCGCCGATTTGTGGCCTAGGATTGCTAGTGCTGCCAATGCCATTGTCTGAGGGCAATAGTTGTAATA

upper sequence: GRMZM2G078396_T02 (Zea mays), 3'ss of exon 3
lower sequence: PP1S62_136V6.1 (Physcomitrella patens), 3'ss of exon 3
gtatagtattgaaggttctgatggtttcatatgcattattattacagctacttgtgctgtgggcatagttgaaattcatcccaaaatacagcaagctgtttagctttatcataagctagcagcctagcacagaagttggggaaataatatgtactcctgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCTAGCGCGGCAAATGCGATCGTCTAAAGGAAGCAGTTTGTCGA-
                         |   | |          | ||  |  | |||| ||  |||   |||  ||    |          |   |  || ||||| ||   |      |  |  | ||| ||  | || ||   |  |  ||  |  |    ||||||||||||||||||||| || ||||| ||||||||||| ||  | ||||| |||||||| ||||| || || ||||| || | |  |  | ||||||     
------------------------gtgagtgtatgcagccggtgca-ttgatggtgcagtctgca-gattgggatgggcctaggg-----ggggggggtatagctgtaaggtggag-ggtggattggcagagctgatgagg--gttgtgcgtggttgtaatgtgcagGTTCTGCCATCACTGGACCGATCGGGAAGGAGTGCGCAGACTTGTGGCCGAGGATTGCGAGCGCTGCCAACGCGATTGTTTGAGAGG-GTAGTTTGGGAGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33090838|gb|CF050832.1|CF050832
EST:     CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCC
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTG-CCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCC
EST: gi|32916005|gb|CF020817.1|CF020817
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCCCTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32937415|gb|CF042234.1|CF042234
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCCCTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|71302701|gb|DR787463.1|DR787463
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATTTTTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|5686825|gb|AI939739.1|AI939739
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGTGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|109637605|gb|EC591150.1|EC591150
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGACCCATCGGAAAGGAGTGCGCGGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|5499254|gb|AI855121.1|AI855121
EST:     CCAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCCCTGGGCCCATCGGAAAGGAGTGTGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|71443810|gb|DR824860.1|DR824860
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32919635|gb|CF024447.1|CF024447
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCCCTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|903273|gb|H35876.1|H35876
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32932933|gb|CF037745.1|CF037745
EST:     CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32934600|gb|CF039412.1|CF039412
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGTCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32940092|gb|CF044911.1|CF044911
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCCCTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|8666012|gb|BE186828.1|BE186828
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGTGCTGATTTTCTGGCCC
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCT-CTGGCCC
EST: gi|32939232|gb|CF044051.1|CF044051
EST:     CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|101381866|gb|EB812990.1|EB812990
EST:     GGGAGAGAGGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: GGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|166619421|gb|EG260150.1|EG260150
EST:     CCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: CCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|113852970|gb|DW973271.1|DW973271
EST:     GTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: GTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32941037|gb|CF045856.1|CF045856
EST:     CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|71317802|gb|DR795668.1|DR795668
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|78118019|gb|DV536406.1|DV536406
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|7135088|gb|AW497910.1|AW497910
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGTGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|93284282|gb|EB676546.1|EB676546
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|33097885|gb|CF057845.1|CF057845
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|213178478|gb|FM190297.1|FM190297
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|60342774|gb|DN209747.1|DN209747
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32838381|gb|CD978059.1|CD978059
EST:     CTTCGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|33092227|gb|CF052221.1|CF052221
EST:     CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGGGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|76290317|gb|DV029885.1|DV029885
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTTTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|213175418|gb|FM193846.1|FM193846
EST:     ATAATGCTGGAGTGATTGTGAACCCNNNGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|33103123|gb|CF063083.1|CF063083
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|33091950|gb|CF051944.1|CF051944
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCCCTGGGCCCATCGGAAAGGAGTGCGCTGATCTTTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|21843444|gb|BQ704025.1|BQ704025
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCACTCGGAAAGGAGTGTGCTGATCTCTGGCCC
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCA-TCGGAAAGGAGTGCGCTGATCTCTGGCCC
EST: gi|32938157|gb|CF042976.1|CF042976
EST:     CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCTTTGATCTCTGGCCCA
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|22546260|gb|BU098571.1|BU098571
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGTGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32942731|gb|CF047550.1|CF047550
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32934094|gb|CF038906.1|CF038906
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|93282079|gb|EB674343.1|EB674343
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|33094987|gb|CF054981.1|CF054981
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32911995|gb|CF016807.1|CF016807
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32944475|gb|CF049294.1|CF049294
EST:     CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32932957|gb|CF037769.1|CF037769
EST:     CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAGAGGAGTGCGCTGATCTCTGGCCCA
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|213174050|gb|FM196183.1|FM196183
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|71302703|gb|DR787464.1|DR787464
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|33096862|gb|CF056822.1|CF056822
EST:     CTTTGAAGACAATGCTGGAGTGATTGTGAGCCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|32943137|gb|CF047956.1|CF047956
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|113670582|gb|DW820560.1|DW820560
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGC
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGC
EST: gi|166452992|gb|EG260614.1|EG260614
EST:     GTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: GTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|87298789|gb|DY470792.1|DY470792
EST:     ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGTGCTGATCTCTGGCCCA
genomic: ACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
EST: gi|33096192|gb|CF056186.1|CF056186
EST:     CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAG                         GTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA
genomic: CTTTGAAGACAATGCTGGAGTGATTGTGAACCCAAAGGGAGAGATGAAAGgtatagtatt ... tgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagctagcagcctagcacagaagttggggaaataatatgtactcctgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCTAGCGCGGCAAATGCGATCGTCTAAAGGAAGCAGTTTGTCGA
                                       tactcct  CT-rich tract
                             aaataatatgtact  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatagtattgaaggttctgatggtttcatatgcattattattacagctacttgtgctgtgggcatagttgaaattcatcccaaaatacagcaagctgtttagctttatcataagctagcagcctagcacagaagttggggaaataatatgtactcctgtgctgcagGTTCTGCCATCACTGGGCCCATCGGAAAGGAGTGCGCTGATCTCTGGCCCAGGATTGCTAGCGCGGCAAATGCGATCGTCTAAAGGAAGCAGTTTGTCGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA