Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76019302|gb|DT946472.1|DT946472EST: GTGTGGGGCCATGGATCCCCGACGGATCGAGGGTCGCGCCGCCTCATGAG AAAATTCATCTTTCTGGCTCGAACAGAAAATACCTGAAGCTTCAATTTGAC
genomic: GTGTGGGGCCATGGATCCCCGACGGATCGAGGGTCGCGCCGCCTCATGAGgtcagtgagc ... cttgttgcagAAAATTCATCTTTCTGGCTCGAACAGAAAATACCTGAAGCTTCAATTTGAC
EST:
gi|71313926|gb|DR793565.1|DR793565EST: GTGTGGGGCCATGGATCCCCGACGGATCGAGGGTCGCGCCGCCTCATGAG AAAATTCATCTTTCTGGCTCGAACAGAAAATACCTGAAGCTTCAATTTGAC
genomic: GTGTGGGGCCATGGATCCCCGACGGATCGAGGGTCGCGCCGCCTCATGAGgtcagtgagc ... cttgttgcagAAAATTCATCTTTCTGGCTCGAACAGAAAATACCTGAAGCTTCAATTTGAC
EST:
gi|213191200|gb|FM183589.1|FM183589EST: GTGTGGGGCCATGGATCCCCGACGGATCGAGGGTCGCGCCGCCTCATGAG AAAAATCATCTTTTTGGCTCGAACAGAAAATACCTGAAGCTTCAATTTGAC
genomic: GTGTGGGGCCATGGATCCCCGACGGATCGAGGGTCGCGCCGCCTCATGAGgtcagtgagc ... cttgttgcagAAAATTCATCTTTCTGGCTCGAACAGAAAATACCTGAAGCTTCAATTTGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatgtgcctgtgccaggtgtagaatataacttttaacatcccactcttgttgcagAAAATTCATCTTTCTGGCTCGAACAGAAAATACCTGAAGCTTCAATTTGACGTCGTGTAGCAATGAATGCGTGCAAGGAATGCTCTTTTACATGTTGAGA
ttttaac putative branch site (score: 2)
tcccactctt CT-rich tract
tagaatataactttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gagatgccaatgtgctaattgtttgtttcttttttctgccattttgatgtgcctgtgccaggtgtagaatataacttttaacatcccactcttgttgcagAAAATTCATCTTTCTGGCTCGAACAGAAAATACCTGAAGCTTCAATTTGACGTCGTGTAGCAATGAATGCGTGCAAGGAATGCTCTTTTACATGTTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA