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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTGTTTTGGAATCGAGAGATCGTATTGGCGGGCGCATTCATACTGATAACTCGTTTGGATGCCCAATTGATATGGGAGCCTCATGgtttgttgccttcactcaaattgctgaacgcaaccgttcaagtttctgcccgtgtaagctcttacttaccttatatatcgttgattcttttttgttaaattcag

Basic information

species Zea mays
transcript GRMZM2G078033_T02
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211084285|gb|FL285143.1|FL285143
EST:     ATTCATACTGATAACTCGTTTGGATGCCCANTTGATATGGGAGCCTCATG                         GGCTACACGGCGTGTGCAATGAGAATCCACTGGCACCAT
genomic: ATTCATACTGATAACTCGTTTGGATGCCCAATTGATATGGGAGCCTCATGgtttgttgcc ... ttaaattcagG-CTACACGGCGTGTGCAATGAGAATCCACTGGCACCAT
EST: gi|19350869|gb|BM895401.1|BM895401
EST:     ATTCATACTGATAACTCGTTTGGATGCCCAATTGATATGGGAGCCTCATG                         GCTACACGGCGTGCTGCAATGAGAATCCACTGGCACCATTGATAAGCTATC
genomic: ATTCATACTGATAACTCGTTTGGATGCCCAATTGATATGGGAGCCTCATGgtttgttgcc ... ttaaattcagGCTACACGGCGTG-TGCAATGAGAATCCACTGGCACCATTGATAAGCTATC
EST: gi|67021466|gb|CO450215.1|CO450215
EST:     GGATGCCCAATTGATATGGGAGCCTCATG                         GCTACACGGCGTGTGCAATGAGAATCCACTGGCACCATTGATAAGCTATCT
genomic: GGATGCCCAATTGATATGGGAGCCTCATGgtttgttgcc ... ttaaattcagGCTACACGGCGTGTGCAATGAGAATCCACTGGCACCATTGATAAGCTATCT
EST: gi|149011847|gb|EE042454.2|EE042454
EST:     ATTCATACTGATAACTCGTTTGGATGCCCAATTGATATGGGAGCCTCATG                         GCTACACGGCGTGTGCAATGAGAATCCACTGGCACCATTGATAAGCTATCT
genomic: ATTCATACTGATAACTCGTTTGGATGCCCAATTGATATGGGAGCCTCATGgtttgttgcc ... ttaaattcagGCTACACGGCGTGTGCAATGAGAATCCACTGGCACCATTGATAAGCTATCT
EST: gi|31364427|gb|CD448782.1|CD448782
EST:     GGGAGCTTCATG                         GCTACACGGCGTGTGCAATGAGAATCCACTGGCACCATTGATAAGCTATCT
genomic: GGGAGCCTCATGgtttgttgcc ... ttaaattcagGCTACACGGCGTGTGCAATGAGAATCCACTGGCACCATTGATAAGCTATCT