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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactacctattattttctcgtacatgtaaaattcttttcccatgttattttgttcttgcacctcactgtgtttgttgatccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG

Basic information

species Zea mays
transcript GRMZM2G078033_T01
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211395845|gb|FL304340.1|FL304340
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTTCTTGGATA-GGATGGTAATCAGGTCCCAAAG
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCT-CTTTGATAAGGATGGTAATCAGGTCCCAAAG
EST: gi|211398473|gb|FL304357.1|FL304357
EST:     ACCGCACAAGCGATGATAAACTCAGT-CTGTATGATCATGATTTAGAAAG                         CTATGCTCTCCTTGATAAGGATGGTA-TCAGGTCCCAAAG-AGACAGTCAA
genomic: ACCGCACAAGCGATGATAA-CTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|211536797|gb|FL304443.1|FL304443
EST:     ACCCGCACA-GCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCCAAAG-AGACAGTCG
genomic: ACC-GCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCC-AAAGGAGACAGTCG
EST: gi|149014104|gb|EE043640.2|EE043640
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|148954808|gb|EC900278.2|EC900278
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATG
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATG
EST: gi|76914296|gb|DV165477.1|DV165477
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGA
EST: gi|211524769|gb|FL304384.1|FL304384
EST:     ACCGCACAAGCGAAGATAACTCAGTTCTGGATGATCATGATTTTAGAAAG                         CCAT-CTCTCCTTTGATAAG
genomic: ACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTT-AGAAAGgtactaccta ... ccctctgcagCTATGCTCTC-TTTGATAAG
EST: gi|211520853|gb|FL149355.1|FL149355
EST:     TACCGCACA-GCGATGATA-CTCAGTTCTGTATGATCATGATTTAGAAAG                         CT-TGCTCTCTTTTGATAAGAATGGTA-TCAGGTCCCCAAGG
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTT-GATAAGGATGGTAATCAGGTCCCAAAGG
EST: gi|211521771|gb|FL304375.1|FL304375
EST:     TACCGCACAAGCGATGATNACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCCTTTGATA-GGATGGGTA-TCAGGTCCCAA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTC-TTTGATAAGGATGG-TAATCAGGTCCCAA
EST: gi|211398481|gb|FL304365.1|FL304365
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTTGATA-GGATGG
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTT-GATAAGGATGG
EST: gi|67015980|gb|CO444729.1|CO444729
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATNAGGGATGGTA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGG-ATGGTA
EST: gi|211395856|gb|FL304351.1|FL304351
EST:     ACCGCACAAGCGATGATAACTCANGT-CTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTTGATAAGGATGGGTA-TCAGGGTCCAAAAGGAGACAGT
genomic: ACCGCACAAGCGATGATAACTCA-GTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTT-GATAAGGATGG-TAATCAGG-TCCCAAAGGAGACAGT
EST: gi|211533789|gb|FL304431.1|FL304431
EST:     ACCNGCACA-GCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCNTCTCTTTGATAAGGATGGTAATCAGGGTCCCAAAGGAGACAGTC
genomic: ACC-GCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGC-TCTCTTTGATAAGGATGGTAATCAGG-TCCCAAAGGAGACAGTC
EST: gi|19350869|gb|BM895401.1|BM895401
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGCCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|211395844|gb|FL304339.1|FL304339
EST:     ACCGCACAAGCGATGATNACTCAGTTCTGTATGATTCATGATT-AGAAAG                         CTATGCTCTCTTTGATAAGGATGGTA-TCAGGTCCCA
genomic: ACCGCACAAGCGATGATAACTCAGTTCTGTATGAT-CATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCA
EST: gi|71434451|gb|DR815501.1|DR815501
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAGGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|211524776|gb|FL304391.1|FL304391
EST:     TACCGCACCAGCGATGATAACTCAGTTCTGTATGATCATGATTTAAAAAG                         CTATGCTCTTCTTTGAAAAGGATGTTAATCAG
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCT-CTTTGATAAGGATGGTAATCAG
EST: gi|211530783|gb|FL304418.1|FL304418
EST:     ACCGCANCA-GCGATGATNACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTTGATAAG-ATGGTAATCAG
genomic: ACCGCA-CAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTT-GATAAGGATGGTAATCAG
EST: gi|91057144|gb|EB167562.1|EB167562
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAA
EST: gi|71437088|gb|DR818138.1|DR818138
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATANGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|149101926|gb|EE287458.2|EE287458
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|211530776|gb|FL304411.1|FL304411
EST:     ACCNGCACA-GCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTTGATAAGGATGGGTA-TCAGGTCCCCAAAG-AGAACCG
genomic: ACC-GCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTT-GATAAGGATGG-TAATCAGGTCCC-AAAGGAGA-CAG
EST: gi|67021466|gb|CO450215.1|CO450215
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|148932442|gb|EC876155.2|EC876155
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAGGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|211530775|gb|FL304410.1|FL304410
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTTGATA-GGATGG
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTT-GATAAGGATGG
EST: gi|211536798|gb|FL304444.1|FL304444
EST:     CCCGCACA-GCGATGANTA-CTCAGTTCTGTATGATCATGATTNAGAAAG                         CTATGCTCTCTTTTGATA-GGATGGTAATCAGGTCCCAA-GGAGACAGTCG
genomic: CC-GCACAAGCGATGA-TAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTT-GATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCG
EST: gi|31359211|gb|CD443568.1|CD443568
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|211533790|gb|FL304432.1|FL304432
EST:     TACCGCACAAGCGATGATTACTCAGGTCTGTATGATCATGATTTAGGAAG                         CTATGCTCTCTTTG
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTG
EST: gi|149011847|gb|EE042454.2|EE042454
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|211397302|gb|FL135062.1|FL135062
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|31364427|gb|CD448782.1|CD448782
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|149080245|gb|EE169268.2|EE169268
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAG
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAG
EST: gi|149097083|gb|EE182890.2|EE182890
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|148950453|gb|EC896022.2|EC896022
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCCAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|148981924|gb|EE027991.2|EE027991
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|91055202|gb|EB165620.1|EB165620
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|148953295|gb|EE152782.2|EE152782
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGNAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|211536790|gb|FL304436.1|FL304436
EST:     TACCGCACA-GCGATGATACCTCAGNTCTGTATGATCATGATTTA-AAAG                         CTTTGCTCTCTTTGATA-GGATGGTAATCAGGTCCCAAAGAA-ACAGTCAA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|149011840|gb|EE042447.2|EE042447
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|211533792|gb|FL304434.1|FL304434
EST:     TACCGCACAAGCGATGATNACTCAGTTCTGTATGATCATGATTTAGAAAG                         C-ATGCTCTCTTTGATTAGGATTGTAATCAGGTCCCCAAGGAGACAGGCCG
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTC-G
EST: gi|148962603|gb|EE013489.2|EE013489
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCC
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCC
EST: gi|149047179|gb|EE048186.2|EE048186
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCCAAGGAGACCGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|211527782|gb|FL304403.1|FL304403
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGA
EST: gi|148969927|gb|EE020832.2|EE020832
EST:     TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAA
genomic: TACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAA
EST: gi|211397303|gb|FL135063.1|FL135063
EST:     ACCCGCACA-GCGATGATNACTCAGTTCTGTATGACCATGATTTAGAAAG                         CTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCAAAAG-AGACAGTC
genomic: ACC-GCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 178

GCAATGAGAATCCACTGGCACCATTGATAAGCTATCTTGGGCTGAGGTTATACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 321

GCAATGAGAATCCACTGGCACCATTGATAAGCTATCTTGGGCTGAGGTTATACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 141

GCAATGAGAATCCACTGGCACCATTGATAAGCTATCTTGGGCTGAGGTTATACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 335

GCAATGAGAATCCACTGGCACCATTGATAAGCTATCTTGGGCTGAGGTTATACCGCACAAGCGATGATAACTCAGTTCTGTATGATCATGATTTAGAAAGgtactaccta ... ccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcccatgttattttgttcttgcacctcactgtgtttgttgatccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG
                                            tccctctgc  CT-rich tract
       atgttatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactacctattattttctcgtacatgtaaaattcttttcccatgttattttgttcttgcacctcactgtgtttgttgatccctctgcagCTATGCTCTCTTTGATAAGGATGGTAATCAGGTCCCAAAGGAGACAGTCGATAAAGTTGGAGAAACATTCGAGAGAATTCTTGAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA