Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20208266|gb|BQ134355.1|BQ134355EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTTAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATTCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST:
gi|22542052|gb|BU092490.1|BU092490EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST:
gi|26456272|gb|CA827855.1|CA827855EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST:
gi|60355641|gb|DN222614.1|DN222614EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST:
gi|6270006|gb|AW157977.1|AW157977EST: TTTATATTAAAT GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCGCATCCACAATTG
genomic: TTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST:
gi|32907995|gb|CF012808.1|CF012808EST: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT GTGAGTGAGAAAGGCATGATCCATGAATCAATTTCTGCGCATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCGCTTGTCATCAGGAACAACCATTACCCAGGCATTTGACTATTTCTCTTTGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgttggcactgtcaattcatttggtcctgtaaattcatcttaccattctgtccatttagcttaatcatgttatctttttcatcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA