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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCTTGTCATCAGGAACAACCATTACCCAGGCATTTGACTATTTCTCTTTGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgttggcactgtcaattcatttggtcctgtaaattcatcttaccattctgtccatttagcttaatcatgttatctttttcatcatcag

Basic information

species Zea mays
transcript GRMZM2G077143_T01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26559263|gb|CA831498.1|CA831498
EST:     TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT                         GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: gi|32907995|gb|CF012808.1|CF012808
EST:     TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT                         GTGAGTGAGAAAGGCATGATCCATGAATCAATTTCTGCGCATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: gi|20208266|gb|BQ134355.1|BQ134355
EST:     TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTTAAT                         GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATTCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: gi|22542052|gb|BU092490.1|BU092490
EST:     TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT                         GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: gi|6270006|gb|AW157977.1|AW157977
EST:     TTTATATTAAAT                         GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCGCATCCACAATTG
genomic: TTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: gi|76910375|gb|DV163831.1|DV163831
EST:     TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT                         GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: gi|87156355|gb|DY401144.1|DY401144
EST:     TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT                         GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
EST: gi|26456272|gb|CA827855.1|CA827855
EST:     TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAAT                         GTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG
genomic: TGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgtt ... tcatcatcagGTGAGTGGGAAAGGCATGATCCATGAATCGATTTCTGCACATCCACAATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGCTTGTCATCAGGAACAACCATTACCCAGGCATTTGACTATTTCTCTTTGGTTTCTTTCCTTGATGCGTCTCCTTCCTTGGAGACTTTTATATTAAATgtaaggtgttggcactgtcaattcatttggtcctgtaaattcatcttaccattctgtccatttagcttaatcatgttatctttttcatcatcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA