Sequence
atgc intronic sequence ATGC exonic sequence...gccattctacacagaaattgatgaaactgaagtttctcagtgatgtaaatggatattgatgaaactatgatgtgcgctgacaatctcttttttaatgcagATCTGAATTAAACTACAAGATATCAGGGCAGATGGACATGTCCCGAATGGAGACGTTGTATCATGCTGACAAGGAGAAGACCGAAGCACTTATCCTGGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G074826_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os05g35530.1 (Oryza sativa), 3'ss of exon 12
gccattctacacagaaattgatgaaactgaagtttctcagtgatgtaaatggatattgatgaaactatga-tgtgcgctgacaatctc-ttttttaatgcagATCTGAATTAAACTACAAGATATCAGGGCAGATGGACATGTCCCGAATGGAGACGTTGTATCATGCTGACAAGGAGAAGACCGAAGCACTTATCCTGGAG
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----------------gtttgtgt--ctga---ctacaaacgttttgaataaaaat-gaagaaactattacttctcagtgacaatctgattattctatgcagATCTGAGCTGAACTGCAAGCTATCAGGGCAGATGGACTTAACCCGAATCGAAACACTATATCATGCTGAGAAGGAAAAGGTTGATGGCCATATCCTTGAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaatggatattgatgaaactatgatgtgcgctgacaatctcttttttaatgcagATCTGAATTAAACTACAAGATATCAGGGCAGATGGACATGTCCCGAATGGAGACGTTGTATCATGCTGACAAGGAGAAGACCGAAGCACTTATCCTGGAG
ttttaat putative branch site (score: 3)
tctctttttt CT-rich tract
aatctcttttttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gccattctacacagaaattgatgaaactgaagtttctcagtgatgtaaatggatattgatgaaactatgatgtgcgctgacaatctcttttttaatgcagATCTGAATTAAACTACAAGATATCAGGGCAGATGGACATGTCCCGAATGGAGACGTTGTATCATGCTGACAAGGAGAAGACCGAAGCACTTATCCTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
gccattc
- - - - - acagaaa
- - - - - - - - - tgatgaa
- - - - - - - - - - - - - - - - - - - - tgatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgctg