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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaccgtaccgcacatttcgcaatcacactctgttccacgacgcttgcttgcgctgcacctgcatgattagtctctaagctgtgtggctgactgggctgctgcagCCGTGGGACGCGTACACGTCGGACACGTCCATCGACATAGGGAAGCACCACGCGCCGACGACGCTGCCCGACAAGGCGGCGTACCTGATCGTCAAGTCGC

Basic information

species Zea mays
transcript GRMZM2G074743_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074743_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os04g51160.1 (Oryza sativa), 3'ss of exon 1
gtgagtaccgtaccgcacatttcgcaatcacactctgttccacgacgcttgcttgcgctgcacctgcatgattagtctctaagctgtgtggctgactgggctgctg---cagCCGTGGGACGCGTACACGTCGGACACGTCCATCGACATAGGGAAGCACCACGCGCCGACGACGCTGCCCGACAAGGCGGCGTACCTGATCGTCAAGTCGC
|| ||  |   | |   ||||      |     ||| ||         ||||  |       |  |  |   | || |  | | ||||||  |   | |  |  ||   ||||| |||||| ||||||||||||||||||| |||||| |   ||||||||||| ||||| |   || || ||||||  |||||||  ||  || | |||||
gtaagcgct-catcaaccattgatgtgtgcgcttctttttttgtttttttgcacggtgaattctcgatttgatcgtgttcatgatgtgtgtttcttttgcattgtgacacagCCATGGGACACGTACACGTCGGACACGTCGATCGACGTGACGAAGCACCACGAGCCGAAGGGCCTCCCGGACAAGCTGGCGTACTGGACGGTGAGGTCGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgctgcacctgcatgattagtctctaagctgtgtggctgactgggctgctgcagCCGTGGGACGCGTACACGTCGGACACGTCCATCGACATAGGGAAGCACCACGCGCCGACGACGCTGCCCGACAAGGCGGCGTACCTGATCGTCAAGTCGC
                                   ggctgac  putative branch site (score: 3)
             atgatta  TA-rich tract