1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctttaccttgaatttacatgaaacatggtatgtgacgtcagaagcttaaccgtccatttctgtgatgaactgctcagttaaatttcggtgttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG
species | Zea mays |
transcript | GRMZM2G073427_T07 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCEST: gi|15100500|gb|BI396291.1|BI396291
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCEST: gi|211541225|gb|FL353516.1|FL353516
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGGATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCEST: gi|211055246|gb|FL322336.1|FL322336
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGC
EST: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAG AATGGTGTCAAACCGGGTATCGG
genomic: GGTGACCTTGAAGAGAATACTGACCCCGCTAACGCCAAGAAGATGAGGAGgtaacatagc ... ttgtgatcagAATGGTGTCAAACCGGGAATCGG
ttaaccgtccatttctgtgatgaactgctcagttaaatttcggtgttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG
gcttaac putative branch site (score: 3)
agttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttaccttgaatttacatgaaacatggtatgtgacgtcagaagcttaaccgtccatttctgtgatgaactgctcagttaaatttcggtgttgtgatcagAATGGTGTCAAACCGGGAATCGGCTAGGCGATCAAGAAAGAGGAAGCAAGCACACTTGACCGATCTTGAATCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG