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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagataaaaaaattcaacccctttatgtcttttgttttgttggtccacaagcatcactatattggacactattatgatggaattgtgaatgtagGTACCCTTGAGCAAACAGAAAAGTCAAGGCCATGGTGGAAAAAGGAAATCTATACCGGTGGCCAAGATTTACTCAAGCCAACCAAATTCAACAACTCATG

Basic information

species Zea mays
transcript GRMZM2G072939_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354039|gb|CD438396.1|CD438396
EST:     ACTATTCTAAGTTATCTCCCAAGTTTAGCGAGAAGAAGAATTATGGCCAG                         GTACCCTTGAGCAAACAGAAAAGTCAAGGCCATGGTGGAAAAAGGAAATCT
genomic: ACTATTCTAAGTTATCTCCCAAGTTTAGCGAGAAGAAGAATTATGGCCAGgtaagataaa ... gtgaatgtagGTACCCTTGAGCAAACAGAAAAGTCAAGGCCATGGTGGAAAAAGGAAATCT
EST: gi|76011525|gb|DT938695.1|DT938695
EST:     ACTATTCTAAGTTATCTCCCAAGTTTAGCGAGAAGAAGAATTATGGCCAG                         GTACCCTTGAGCAAACAGAAAAGTCAAGGCCATGGTGGAAAAAGGAAATCT
genomic: ACTATTCTAAGTTATCTCCCAAGTTTAGCGAGAAGAAGAATTATGGCCAGgtaagataaa ... gtgaatgtagGTACCCTTGAGCAAACAGAAAAGTCAAGGCCATGGTGGAAAAAGGAAATCT
EST: gi|31359541|gb|CD443898.1|CD443898
EST:     ACTATTCTAAGTTATCTCCCAAGTTTAGCGAGAAGAAGAATTATGGCCAG                         GTACCCTTGAGCAAACAGAAAAGTCAAGGCCATGGTGGAAAAAGGAAATCT
genomic: ACTATTCTAAGTTATCTCCCAAGTTTAGCGAGAAGAAGAATTATGGCCAGgtaagataaa ... gtgaatgtagGTACCCTTGAGCAAACAGAAAAGTCAAGGCCATGGTGGAAAAAGGAAATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtccacaagcatcactatattggacactattatgatggaattgtgaatgtagGTACCCTTGAGCAAACAGAAAAGTCAAGGCCATGGTGGAAAAAGGAAATCTATACCGGTGGCCAAGATTTACTCAAGCCAACCAAATTCAACAACTCATG
                              tattatgat  TA-rich tract