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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttgattatcaaaattttctttagtttggtgctgcttgattttgcttattgacctttcagttgtgtgtaaattctcactaaaattttcactgttgcagGGTGGAGAATCTGGCTGGAGTAGCCTGCATAGAGCACTTCATTTTGGTCACCTATGTATTGCTGGTGTTCTTTTACAGTTTGGTGCTTCCCTCGCTTTGG

Basic information

species Zea mays
transcript GRMZM2G072767_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G072767_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g07080.1 (Oryza sativa), 3'ss of exon 3
--attttgattatcaa--aattttctttagtttggtgctgcttgattttgcttattgacctttcagttgtgtgtaaattctcactaaaattttcactgttgcagGGTGGAGAATCTGGCTGGAGTAGCCTGCATAGAGCACTTCATTTTGGTCACCTATGTATTGCTGGTGTTCTTTTACAGTTTGGTGCTTCCCTCGCTTTGG
  |||||| |  |  |  ||| |||   |       |  |  ||  |     | |||||           |   ||| ||| | |   |  |  |   ||||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||| ||||| |||||||| |||||||||| || ||||| |||||||
ggattttggtgttagatcaatgttccaaaaagcaagga-gtatgcctgcatgttttgacaa---gaacacggaaaaactctaaattttaactcaatacttgcagGATGGAGAATCTGGCTGGAGCAGCCTGCACAGAGCACTTCATTTTGGCCACCTGTGTGTTGCTAGTGTTCTTCTACAGTTTGGAGCATCCCTTGCTTTGG

upper sequence: GRMZM2G072767_T01 (Zea mays), 3'ss of exon 5
lower sequence: Vv08s0032g00280.t01 (Vitis vinifera), 3'ss of exon 3
------attttgattatcaaaattttctttagtttggtgctgcttgattttgcttattgacctttcagttgtgtgtaaattctcactaaaattttcactgttgcagGGTGGAGAATCTGGCTGGAGTAGCCTGCATAGAGCACTTCATTTTGGTCACCTATGTATTGCTGGTGTTCTTTTACAGTTTGGTGCTTCCCTCGCTTTGG
      ||| ||  |||  |      |||   | |||   |  |  |    |  || |    || |  || |   | |    || |    ||||||  |||  |||| ||||||||| || ||||||||||| ||||| || || ||||||||||||||   | | ||  || ||||| | |||| |||||| ||  |  | || |
tagtagattctgcatatgcaggaagacttatatgtgggctttataaagcaggaatactttaattcctcttctacatgatccttctc----attttc--tgtgtcagGATGGAGAATCGGGATGGAGTAGCCTTCATAGGGCTCTGCATTTTGGTCACCTTGCTGTGGCAAGTATTCTTCTTCAGTCTGGTGCATCTATTACATTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttattgacctttcagttgtgtgtaaattctcactaaaattttcactgttgcagGGTGGAGAATCTGGCTGGAGTAGCCTGCATAGAGCACTTCATTTTGGTCACCTATGTATTGCTGGTGTTCTTTTACAGTTTGGTGCTTCCCTCGCTTTGG
                                cactaaa  putative branch site (score: 2)
                                        ttttcact  CT-rich tract
                                 actaaaatttt  TA-rich tract