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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGTGGAAGTATGGAGTCTGCCTTAGAACTGCTAGCATCAACTCCATATTGCTTATCAATTGAGAAAGTGTTTGTTATAGGAGGCGGACAGGTACTGAGgtgagttattaccttttggaacaacatattgtacatgtattctgttgctgcatgtcatgtgttgcaatgctattcacccttctggaatatttttctgtag

Basic information

species Zea mays
transcript GRMZM2G072608_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G072608_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g29390.1 (Oryza sativa), 5'ss of exon 2
TCTGTGGAAGTATGGAGTCTGCCTTAGAACTGCTAGCATCAACTCCATATTGCTTATCAATTGAGAAAGTGTTTGTTATAGGAGGCGGACAGGTACTGAGgtgagttattaccttttggaacaacatattgtacatgtattctgttgctgc-atgtcatgtgttgcaatgctattcaccct--tctggaatatttttctgtag
|||||||||| ||| | ||||| || ||||| ||| ||||||||||||| || ||||| ||||||||||| ||||||||||| || ||||| ||||| ||||||| | ||| ||||||  | | ||| | |||  |  ||| ||||| | |  | |  |      |||  ||||||||| |  |||| || ||||  ||||||
TCTGTGGAAGCATGAACTCTGCATTGGAACTACTATCATCAACTCCATACTGTTTATCCATTGAGAAAGTTTTTGTTATAGGGGGTGGACAAGTACTAAGgtgagctgttaacttttgccaaagcatctagtatgtaaattgtgttgtttctgtatactccacctcaactctattcacctttatctgtaaaatttcactgtag

upper sequence: GRMZM2G072608_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA04G01240.1 (Glycine max), 5'ss of exon 1
TCTGTGGAAGTATGGAGTCTGCCTTAGAACTGCTAGCATCAACTCCATATTGCTTATCAATTGAGAAAGTGTTTGTTATAGGAGGCGGACAGGTACTGAGgtgagttattaccttttggaacaacatattgtacatgtattctgttgctgcatgtcatgtgttgcaatgctattcacccttctggaatatttttctgtag--
| |||||||| |||  |||||| || |||||| ||||  |  |||| || |   | |||||||||||||| |||||||||||||| || ||| || | ||||     ||     |||  || |   | || | |||    ||  |     | | ||||||   ||  |  | ||     |    ||  |||||  ||||   
TATGTGGAAGCATGTCGTCTGCATTGGAACTGTTAGCTGCTTCTCCTTACTCTCTGTCAATTGAGAAAGTATTTGTTATAGGAGGTGGTCAGATATTTAGgta---catctttctttaaaatattttgttcttcatccgctccttc----cttttcatgttaagctct-ttctttgttatagctgataattttcatgtacag