1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgattattgacatctaaatatgatatataattcatataaaagacattgtttagtaaggtctgttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATATCCATGGGAACAGAAGTTAGTGACCTTGACTTATCGAATATCAGAGAGC
species | Zea mays |
transcript | GRMZM2G070831_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAG ATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATAEST: gi|32837540|gb|CD977218.1|CD977218
genomic: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAGgtgattattg ... ttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATA
EST: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAG ATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATAEST: gi|32837348|gb|CD977026.1|CD977026
genomic: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAGgtgattattg ... ttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATA
EST: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTTTCTGAG ATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATAEST: gi|32836797|gb|CD976475.1|CD976475
genomic: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAGgtgattattg ... ttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATA
EST: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAG ATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATA
genomic: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAGgtgattattg ... ttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATA
atatgatatataattcatataaaagacattgtttagtaaggtctgttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATATCCATGGGAACAGAAGTTAGTGACCTTGACTTATCGAATATCAGAGAGC
ttgttttc CT-rich tract
atatataattcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattattgacatctaaatatgatatataattcatataaaagacattgtttagtaaggtctgttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATATCCATGGGAACAGAAGTTAGTGACCTTGACTTATCGAATATCAGAGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT