1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gctttggcaaactggcccttagacttgcatttttgttatcttctcgtctgttgcaagtatctagttaactaatgagaaaaatgtccttttgcctgctcagATTCGAGTGAGAAGTGGGGATAAAGTTTTCAAGGGTTCAGTTGAGCAGATGGACCGCATCAAATTAAGAACCTTTGTTGCTTTGACAATGGATGTCGTGT
species | Zea mays |
transcript | GRMZM2G069865_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTGATGCCTTCATTGAACGCTGTAACTTGGATCCAGATTGTTACATAACG ATTCGAGTGAGAAGTGGGGATAAAGTTTTCAAGGGTTCAGTTGAGCAGATGEST: gi|71421457|gb|DR805438.1|DR805438
genomic: TTGATGCCTTCATTGAACGCTGTAACTTGGATCCAGATTGTTACATAACGgtatgcaatt ... gcctgctcagATTCGAGTGAGAAGTGGGGATAAAGTTTTCAAGGGTTCAGTTGAGCAGATG
EST: TTGATGCCTTCATTGAACGCTGTAACTTGGATCCAGATTGTTACATAACG ATTCGAGTGAGAAGTGGGGATAAAGTTTTCAAGGGTTCAGTTGAGCAGATG
genomic: TTGATGCCTTCATTGAACGCTGTAACTTGGATCCAGATTGTTACATAACGgtatgcaatt ... gcctgctcagATTCGAGTGAGAAGTGGGGATAAAGTTTTCAAGGGTTCAGTTGAGCAGATG
gtctgttgcaagtatctagttaactaatgagaaaaatgtccttttgcctgctcagATTCGAGTGAGAAGTGGGGATAAAGTTTTCAAGGGTTCAGTTGAGCAGATGGACCGCATCAAATTAAGAACCTTTGTTGCTTTGACAATGGATGTCGTGT
aactaat putative branch site (score: 144)
tccttttgcctgctc putative PPT
ttaactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttggcaaactggcccttagacttgcatttttgttatcttctcgtctgttgcaagtatctagttaactaatgagaaaaatgtccttttgcctgctcagATTCGAGTGAGAAGTGGGGATAAAGTTTTCAAGGGTTCAGTTGAGCAGATGGACCGCATCAAATTAAGAACCTTTGTTGCTTTGACAATGGATGTCGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - ttgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - ttgcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa