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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtccataaaatcccttgactttattttgtacccacaataatagttactgcttttggaatgccagtttgtttgttttggatatgtatttgtttc...

Basic information

species Zea mays
transcript GRMZM2G069174_T03
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89249460|gb|DY621246.1|DY621246
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|84969571|gb|DW468004.1|DW468004
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|84969571|gb|DW468004.1|DW468004
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|84969571|gb|DW468004.1|DW468004
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|84969571|gb|DW468004.1|DW468004
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|78092220|gb|DV520594.1|DV520594
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|32838206|gb|CD977884.1|CD977884
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGAATAATGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|93284250|gb|EB676514.1|EB676514
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|149001129|gb|EE038389.2|EE038389
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|148977171|gb|EE026014.2|EE026014
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|149015207|gb|EE044991.2|EE044991
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|93283657|gb|EB675921.1|EB675921
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|50324319|gb|CO519445.1|CO519445
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|94479305|gb|EB708263.1|EB708263
EST:     TATTGGTGAGCGGCAATGCTTTGTGGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|71756547|gb|DR954484.1|DR954484
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|76014651|gb|DT941821.1|DT941821
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|22521297|gb|BU080108.1|BU080108
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|22521297|gb|BU080108.1|BU080108
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|22521297|gb|BU080108.1|BU080108
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|22521297|gb|BU080108.1|BU080108
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|76287741|gb|DV027309.1|DV027309
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATTTCC
EST: gi|149097086|gb|EE182893.2|EE182893
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|78080542|gb|DV508954.1|DV508954
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|71760109|gb|DR958046.1|DR958046
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|78108923|gb|DV527340.1|DV527340
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|71763726|gb|DR961663.1|DR961663
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|101386772|gb|EB815403.1|EB815403
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|71299812|gb|DR785918.1|DR785918
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|91872802|gb|EB402759.1|EB402759
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|71763868|gb|DR961805.1|DR961805
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|50329789|gb|CO524915.1|CO524915
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|71308293|gb|DR790381.1|DR790381
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|23357551|gb|BU645200.1|BU645200
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|23357551|gb|BU645200.1|BU645200
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|23357551|gb|BU645200.1|BU645200
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|23357551|gb|BU645200.1|BU645200
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|71310292|gb|DR791438.1|DR791438
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|76015058|gb|DT942228.1|DT942228
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|76015058|gb|DT942228.1|DT942228
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|76015058|gb|DT942228.1|DT942228
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|76015058|gb|DT942228.1|DT942228
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|74246261|gb|DT654175.1|DT654175
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|84970145|gb|DW468495.1|DW468495
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|33092963|gb|CF052957.1|CF052957
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|93282342|gb|EB674606.1|EB674606
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|21809923|gb|BQ668241.1|BQ668241
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|21809923|gb|BQ668241.1|BQ668241
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|21809923|gb|BQ668241.1|BQ668241
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|21809923|gb|BQ668241.1|BQ668241
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|38687433|gb|CK144464.1|CK144464
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|149090691|gb|EE180018.2|EE180018
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|32838606|gb|CD978284.1|CD978284
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|89247221|gb|DY619007.1|DY619007
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|76925262|gb|DV170349.1|DV170349
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|50337376|gb|CO532502.1|CO532502
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|149089359|gb|EE178597.2|EE178597
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|32839224|gb|CD978905.1|CD978905
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|88757281|gb|DY541422.1|DY541422
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCAAGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---C--G-G-TGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGT
EST: gi|78109548|gb|DV527964.1|DV527964
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|88747131|gb|DY531272.1|DY531272
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|71758124|gb|DR956061.1|DR956061
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|91869562|gb|EB400438.1|EB400438
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|71774454|gb|DR972332.1|DR972332
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|93282822|gb|EB675086.1|EB675086
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|89251527|gb|DY623313.1|DY623313
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|86472990|gb|DY239360.1|DY239360
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|211347561|gb|FL462321.1|FL462321
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|211347561|gb|FL462321.1|FL462321
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|211347561|gb|FL462321.1|FL462321
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|211347561|gb|FL462321.1|FL462321
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|93017315|gb|EB642835.1|EB642835
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|22715613|gb|BU197864.1|BU197864
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|22715613|gb|BU197864.1|BU197864
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|22715613|gb|BU197864.1|BU197864
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|22715613|gb|BU197864.1|BU197864
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|71762173|gb|DR960110.1|DR960110
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|148949612|gb|EC895083.2|EC895083
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|50332319|gb|CO527445.1|CO527445
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|32837285|gb|CD976963.1|CD976963
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|33467080|gb|CF244129.1|CF244129
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|78089991|gb|DV518365.1|DV518365
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|71429865|gb|DR810915.1|DR810915
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|32838442|gb|CD978120.1|CD978120
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|148949615|gb|EC895086.2|EC895086
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
EST: gi|87157178|gb|DY401967.1|DY401967
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|87157178|gb|DY401967.1|DY401967
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|87157178|gb|DY401967.1|DY401967
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|87157178|gb|DY401967.1|DY401967
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|37425821|gb|CF650659.1|CF650659
EST:     TATTGGTGAGCGGCAATCCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|37425821|gb|CF650659.1|CF650659
EST:     TATTGGTGAGCGGCAATCCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|37425821|gb|CF650659.1|CF650659
EST:     TATTGGTGAGCGGCAATCCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         G
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcag-
EST: gi|149013312|gb|EE042897.2|EE042897
EST:     TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTC                         GTGGCGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT
genomic: TATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtc ... ctgtcttcagG---CGGTGGTAGCAGGGGAGGAAGGTTTCCACCAGGTAGAGGTGGTAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTCTCCTGTTACTATTGGTGAGCGGCAATGCTTTGTCGAAGAGAAAAGGACTACTGGTTCTCgtggcaagtccataaaatcccttgactttattttgtacccacaataatagttactgcttttggaatgccagtttgtttgttttggatatgtatttgtttc

- - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - AAGAGA