1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgtaccatgattgagagcacatgaattgatattcagtaagaaaattcacctattggctgctattaaaactgtag
species | Zea mays |
transcript | GRMZM2G069008_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|76926121|gb|DV170728.1|DV170728
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|148991429|gb|EE032931.2|EE032931
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: GAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|45847993|gb|CN071936.1|CN071936
genomic: GAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: ACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|149096586|gb|EE182344.2|EE182344
genomic: ACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|149074764|gb|EE163194.2|EE163194
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|149074765|gb|EE163195.2|EE163195
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATTTGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|78087424|gb|DV515817.1|DV515817
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|6021120|gb|AW066048.1|AW066048
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGNGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|148942502|gb|EC887517.2|EC887517
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|91054277|gb|EB164695.1|EB164695
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|29544119|gb|CB604499.1|CB604499
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: AGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|67016855|gb|CO445604.1|CO445604
genomic: AGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|148991430|gb|EE032932.2|EE032932
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|211274440|gb|FL232532.1|FL232532
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGEST: gi|148942503|gb|EC887518.2|EC887518
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTG
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|149096585|gb|EE182343.2|EE182343
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|149111714|gb|EE190861.2|EE190861
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|67042992|gb|CO469247.1|CO469247
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|78082237|gb|DV510649.1|DV510649
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|78082236|gb|DV510648.1|DV510648
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGGAGTCGAATGGAGAAACATATGCTGTGCTTTCCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|113703128|gb|EE680632.1|EE680632
genomic: TGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TTGGGGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|29543762|gb|CB604142.1|CB604142
genomic: TTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTAEST: gi|31355362|gb|CD439719.1|CD439719
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
EST: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAG GTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
genomic: TGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgta ... aaaactgtagGTTAGAGTTCCTATTGGAAAATTCCTGTTGGAGCTGCCTGCTGGGATGCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCCAGGAATTGTCTTTGCAAGAGGGCCCGCGGTTGCTGTGTTGATTCTTTTGGAGTCGAATGGAGAAACATATGCTGTGCTTACCGAACAGgtatagtgtaccatgattgagagcacatgaattgatattcagtaagaaaattcacctattggctgctattaaaactgtag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG