1 5' 3' | 2 5' 3' |
GCCCGTCCCCACTCCCAGGGAAGGTCTCCTCCTGCTTGATGGCGCTACGGTCGTGCCCTGCGTCCTAGACGAAGAGGAACTGCTGATTCCTAAGCTTCAGgtaatgtaactgtcgattctgcacttattgaaccccccttgtatgaaatcttccaacttcccgaggagcaatactctgcaactcggcatgtgcatggtag...
species | Zea mays |
transcript | GRMZM2G067298_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCATGCCCTGCGTCCTAGACGAAGAGGAACTGCTGATTCCTAAGCTTCAG GTCATTGCAGCTTCCCTACATCCACCTCATCAGGCAGAGGAGAAGCTCGGGEST: gi|26558557|gb|CA830792.1|CA830792
genomic: TCGTGCCCTGCGTCCTAGACGAAGAGGAACTGCTGATTCCTAAGCTTCAGgtaatgtaac ... tattgtgcagGTCATTGCAGCTTCCCTACCTCCACCTCATCAGGCAGAGGAGAAGCTCGGG
EST: TCATGCCCTGCGTCCTAGACGAAGAGGAACTGCTGATTCCTAAGCTTCAG GTCATTGCAGCTTCCCTACATCCACCTCATCAGGCAGAGGAGAAGCTCGGGEST: gi|87155672|gb|DY400461.1|DY400461
genomic: TCGTGCCCTGCGTCCTAGACGAAGAGGAACTGCTGATTCCTAAGCTTCAGgtaatgtaac ... tattgtgcagGTCATTGCAGCTTCCCTACCTCCACCTCATCAGGCAGAGGAGAAGCTCGGG
EST: TCATGCCCTGCGTCCTAGACGAAGAGGAACTGCTGATTCCTAAGCTTCAG GTCATTGCAGCTTCCCTACATCCACCTCATCAGGCAGAGGAGAAGCTCGGG
genomic: TCGTGCCCTGCGTCCTAGACGAAGAGGAACTGCTGATTCCTAAGCTTCAGgtaatgtaac ... tattgtgcagGTCATTGCAGCTTCCCTACCTCCACCTCATCAGGCAGAGGAGAAGCTCGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCGTCCCCACTCCCAGGGAAGGTCTCCTCCTGCTTGATGGCGCTACGGTCGTGCCCTGCGTCCTAGACGAAGAGGAACTGCTGATTCCTAAGCTTCAGgtaatgtaactgtcgattctgcacttattgaaccccccttgtatgaaatcttccaacttcccgaggagcaatactctgcaactcggcatgtgcatggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccct