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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctatgcatgtcagatttaatttatggagtgaagaatttactttgtaatcaagaacttccatctaacattaactgttgatatttttttatgttcaagtgtaaccttgcttaccactttcatgtgttctataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG

Basic information

species Zea mays
transcript GRMZM2G067067_T09
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86473419|gb|DY239789.1|DY239789
EST:     AACTGGTTCAAGAGGTGATTCTGTCTCCCCAAATAATATCTTATGTTCAA                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: AACTGGTTCAAGAGGTGATTCTGTCTCCCCAAATAATATCTTATGTTCAAgtgagctatg ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttatgttcaagtgtaaccttgcttaccactttcatgtgttctataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTATTGCCTCACAG
                      tgcttac  putative branch site (score: 2)
                                         ttctataaat  TA-rich tract