1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcatgttttaaatattacatatgttgcagcatttcatttgttttaaatttaaaacaatagctcaaccttgtaatcctctttgcaatatttaatatttttttattctgtcattgacacttggcatttgctttttcgcagATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTGATTCTAGACAATTTTGTTGAGTGGCTAAGAGAAAATAAAAGCTAGATCT
species | Zea mays |
transcript | GRMZM2G067067_T08 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAG ATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTGEST: gi|12973745|gb|BG268634.1|BG268634
genomic: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAGgtcatgtttt ... tttttcgcagATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTG
EST: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAG ATAAACTNNNNNNNNNCATGACAATTATGATTCAGACCTTGCTTGGCCTTTEST: gi|6827963|gb|AW331606.1|AW331606
genomic: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAGgtcatgtttt ... tttttcgcagATAAACTTCCCATCA-CTTGACAATTATGATTCAGACCTTGCTTGGCCTTT
EST: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAG ATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTGEST: gi|32864042|gb|CF003724.1|CF003724
genomic: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAGgtcatgtttt ... tttttcgcagATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTG
EST: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAG ATAAACTTCCCATCACTTGACEST: gi|6342613|gb|AW165437.1|AW165437
genomic: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAGgtcatgtttt ... tttttcgcagATAAACTTCCCATCACTTGAC
EST: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAG ATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTGEST: gi|16919108|gb|BM074042.1|BM074042
genomic: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAGgtcatgtttt ... tttttcgcagATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTG
EST: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAG ATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTGEST: gi|74233885|gb|DT641799.1|DT641799
genomic: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAGgtcatgtttt ... tttttcgcagATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTG
EST: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAG ATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTG
genomic: AGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAGgtcatgtttt ... tttttcgcagATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTG
aatatttaatatttttttattctgtcattgacacttggcatttgctttttcgcagATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTGATTCTAGACAATTTTGTTGAGTGGCTAAGAGAAAATAAAAGCTAGATCT
cattgac putative branch site (score: 3)
tttgctttttc putative PPT
ttaatatttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcatgttttaaatattacatatgttgcagcatttcatttgttttaaatttaaaacaatagctcaaccttgtaatcctctttgcaatatttaatatttttttattctgtcattgacacttggcatttgctttttcgcagATAAACTTCCCATCACTTGACAATTATGATTCAGACCTTGCTTGGCCTTTGATTCTAGACAATTTTGTTGAGTGGCTAAGAGAAAATAAAAGCTAGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA