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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaatggattctacttttttatgtggttctactcatcctttcttcatgaagactcggtgctcaattgacatgctatatttggactgtgtttcagTACCAAAATGACTACAAGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAGGTCATGTTTTAAATATTACATATGTTGCAGCATT

Basic information

species Zea mays
transcript GRMZM2G067067_T06
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211009144|gb|FL186797.1|FL186797
EST:     TAGGCTTGCAGTTCCGCCCTCAGGTTGACAAGCTTARTAATTACCTCAAG                         TACCAAAATGACTACAAGGKGATAAACATGGATCAGTGGATGGGATTTATG
genomic: TAGGCTTGCAGTTCCGCCCTCAGGTTGACAAGCTTAGTAATTACCTCAAGgcaatggatt ... tgtgtttcagTACCAAAATGACTACAAGGTGATAAACATGGATCAGTGGATGGGATTTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttcatgaagactcggtgctcaattgacatgctatatttggactgtgtttcagTACCAAAATGACTACAAGGTGATAAACATGGATCAGTGGATGGGATTTATGCGGTTCTGTAATGAGGTCATGTTTTAAATATTACATATGTTGCAGCATT
                       aattgac  putative branch site (score: 3)
                                  tatattt  TA-rich tract