1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgcattgcatactgttattcaagtgttcatttaagaacttgttttagttctaatagtaaaggtttgttctatgctttcaagtgttgactaatacatgttttatgttaccagGATGAATGGAGAGCTGGTTTGAAAGCTCTTCGAGCAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG
species | Zea mays |
transcript | GRMZM2G067067_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG GATGAATGGAGAGCTGGTTTGAAAGCTCTTCGAGCAGACAGCATCAGTAAAEST: gi|74233001|gb|DT640915.1|DT640915
genomic: GAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTGgtatgcattg ... atgttaccagGATGAATGGAGAGCTGGTTTGAAAGCTCTTCGAGCAGACAGCATCAGTAAA
EST: GAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTG GATGAATGGAGAGCTGGTTTGAAAGCTCTTCGAGCAGACAGCATCAGTAAA
genomic: GAAAATGGGCTGTGAGAAGCAAGGTTATTTTACCTTGgtatgcattg ... atgttaccagGATGAATGGAGAGCTGGTTTGAAAGCTCTTCGAGCAGACAGCATCAGTAAA
taaaggtttgttctatgctttcaagtgttgactaatacatgttttatgttaccagGATGAATGGAGAGCTGGTTTGAAAGCTCTTCGAGCAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG
gactaat putative branch site (score: 106)
taatacatgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcattgcatactgttattcaagtgttcatttaagaacttgttttagttctaatagtaaaggtttgttctatgctttcaagtgttgactaatacatgttttatgttaccagGATGAATGGAGAGCTGGTTTGAAAGCTCTTCGAGCAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA