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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATCGCCCCTCTCAACTACCGCTGGgtgcgtgcgtgctcctccacttcatctccttttctcggttcttacagcacacagcactcactccggcaaagagtgcaagtaagtttcgtcgtcgtctccccctgttctgaagcag

Basic information

species Zea mays
transcript GRMZM2G066426_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066426_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g03630.1 (Oryza sativa), 5'ss of exon 2
CGTCGAGTACGTGCAGCTGTTCCTCGCCGTCACCTACGCCGGAGCCATCATCGCCCCTCTCAACTACCGCTGGgtg-cgtgcgtgctcctccacttcatctccttttctcggttcttacagcacacagcactcactccggcaaagagtgcaagtaagtttcgtcgt--cgtctccccctgttctgaagcag--------------------------------------------
| |||||||| |  |||||||| | |||||||| |||  |||||  |||||||| ||||||||||||||||||||           |||| ||| |||| |     || |   |   |  | | | |     |       |||| | |     | | ||||   ||   ||     |||||  |||  |                                              
CATCGAGTACATCGAGCTGTTCTTAGCCGTCACTTACATCGGAGGGATCATCGCTCCTCTCAACTACCGCTGGgtaataattcaattccttcacctcatgta----tcacaaattcaagggaaaaaaaagagctgcaattcaaacattttgtctgaatttccatgtgctgttctagcctgtgttgatactttatactgaacattgaactgtgtcatcttccatgtgggtggtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211527119|gb|FL163647.1|FL163647
EST:     TCGCCGTCACCTACGCCGGAGCCATCATCGCCCCTCTCAACTACCGCTGG                         AGCTTCTAGGAGGCGGCGCATGCGGTGGAGCTCGTGCGGCCGACGGCGTTC
genomic: TCGCCGTCACCTACGCCGGAGCCATCATCGCCCCTCTCAACTACCGCTGGgtgcgtgcgt ... tctgaagcagAGCTTCGAGGAGGCGGCGCAGGCGGTGGAGCTCGTGCGGCCGACGGCGTTC
EST: gi|211007877|gb|FL014946.1|FL014946
EST:     TCGCCGTCACCTACGCCGGAGCCATCATCGCCCCTCTCAACTACCGCTGG                         AGCTTCGAGGAGGCGGCGCANGCGGTGGAGCTCGTGCGGCCGACGGCGTTC
genomic: TCGCCGTCACCTACGCCGGAGCCATCATCGCCCCTCTCAACTACCGCTGGgtgcgtgcgt ... tctgaagcagAGCTTCGAGGAGGCGGCGCAGGCGGTGGAGCTCGTGCGGCCGACGGCGTTC
EST: gi|211007876|gb|FL014945.1|FL014945
EST:     TCGCCGTCACCTACGCCGGAGCCATCATCGCCCCTCTCAACTACCGCTGG                         AGCTTCGAGGAGGCGGCGCAGGCGGTGGAGCTCGTGCGGCCGACGGCGTTC
genomic: TCGCCGTCACCTACGCCGGAGCCATCATCGCCCCTCTCAACTACCGCTGGgtgcgtgcgt ... tctgaagcagAGCTTCGAGGAGGCGGCGCAGGCGGTGGAGCTCGTGCGGCCGACGGCGTTC