1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaaaattccaagagataatttttatcatgctgcaattactgattcagtggattgtcgaagtgaccatttctgatgattgttgatctgtggcatgttttgcttgtgcagGGCACCTGCCTTCCTCTCAGCAGCTACATGAGCTCACAGGCTGAAATCAGTGAGAGAATGAGAGCTATCCTTATCGACTGGATTATCGAGGTACAGTACA
species | Zea mays |
transcript | GRMZM2G062453_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTTGAATATGTTGAGCACATTTACAGATTCTACAAAGGAACACCTGAG GGCACCTGCCTTCCTCTCAGCAGCTACATGAGCTCACAGGCTGAAATCAGEST: gi|22935910|gb|BU572185.1|BU572185
genomic: TCGTTGAATATGTTGAGGACATTTACAGATTCTAC-AA-GAGCA-CTGAGgtaaaaattc ... gcttgtgcagGGCACCTGCCTTCCTCTCAGCAGCTACATGAGCTCACAGGCTGAAATCAG
EST: CAGTCGTTGAATATGTTGAGCACATTTACAGATTCTACAAGAGCACTGAG GGCACCTGCCTTCCTCTCAGCAGCTACATGAGCTCACAGGCTGAAATCAGT
genomic: CAGTCGTTGAATATGTTGAGGACATTTACAGATTCTACAAGAGCACTGAGgtaaaaattc ... gcttgtgcagGGCACCTGCCTTCCTCTCAGCAGCTACATGAGCTCACAGGCTGAAATCAGT
gtcgaagtgaccatttctgatgattgttgatctgtggcatgttttgcttgtgcagGGCACCTGCCTTCCTCTCAGCAGCTACATGAGCTCACAGGCTGAAATCAGTGAGAGAATGAGAGCTATCCTTATCGACTGGATTATCGAGGTACAGTACA
ttttgctt CT-rich tract
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaattccaagagataatttttatcatgctgcaattactgattcagtggattgtcgaagtgaccatttctgatgattgttgatctgtggcatgttttgcttgtgcagGGCACCTGCCTTCCTCTCAGCAGCTACATGAGCTCACAGGCTGAAATCAGTGAGAGAATGAGAGCTATCCTTATCGACTGGATTATCGAGGTACAGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT