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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcgatgttctacactggtgaaattttcaatgcaaattaatttcgttcccttaagggttgagaaattgtaatgcatcggaaataatgttttcactagaccatgtgatgttttgtactgtcaattagctattgatatggaagggttaaagttattcttgcatcgtcttatgtgggtacctttcttaccgtagGGGGTTTCCTCAACTTCATGTTGACTGGAAGTACCTATGCTCTTCGTTTTGGTATTGTTCTTGGCCTTGCATTGTTGACTCTGGGAATCTCAAGTTTGAG

Basic information

species Zea mays
transcript GRMZM2G060718_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G060718_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g60650.1 (Oryza sativa), 3'ss of exon 2
---------gtatgtcg-atgttctacactggtgaaattttcaatgcaaattaatttcgttcccttaagggttgagaaat-tgtaatgcatcggaaataatgttttcactagaccatgtgatgttttgtactgtcaattagctattgatatggaagggttaaagttatt--cttgcatcgtcttatgtgggtacctttcttaccgtagGGGGTTTCCTCAACTTCATGTTGACTGGAAGTACCTATGCTCTTCGTTTTGGTATTGTTCTTGGCCTTGCATTGTTGACTCTGGGAATCTCAAGTTTGAG
          |   |   || || | |  || |  ||||| |  ||  |||||||||  | |  |   |  |||| |||   |||||  | ||  || | ||| | || | |    |||   |   | || ||     | | |||  |  |       || |  | ||   | |||   || || ||| |||||||||||||||||||| |||||||| ||||||||| | ||||| || || | |||  |||||||||||||| |||||||| ||||  ||||  || |                  
gtaactaaaatgcattacatatttttctttg-tagaatttccgttgataattaatttgatac--tggggaattgacaaacacgtaataaaccgagaa-agtgtgt-cattcg-ttgtgtag-gcactttaatgctgccttgttatgtaggttctcaactttagttcatggacctgccctgttttttgtagGTACCTTTCTTACCGTAGGAGGTTTCCTGAACTTCATGCTTACTGGGAGGACATCTGCAATTCGTTTTGGTATTATTCTTGGCTTTGCGCTGTTAGCTAT------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaagggttaaagttattcttgcatcgtcttatgtgggtacctttcttaccgtagGGGGTTTCCTCAACTTCATGTTGACTGGAAGTACCTATGCTCTTCGTTTTGGTATTGTTCTTGGCCTTGCATTGTTGACTCTGGGAATCTCAAGTTTGAG
                                           ttcttac  putative branch site (score: 2)
                                        cctttcttacc  CT-rich tract
       ttaaagttattctt  TA-rich tract