1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgtaggtttatttaattctctttccttgaattcttctatctcagaaagaccagaactgattttttttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTTTAAGAGTTACATCATGGCGTGAATCAATACAG
species | Zea mays |
transcript | GRMZM2G057412_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGAATCTCAGATTTTATTAAG AATGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTEST: gi|93281097|gb|EB673361.1|EB673361
genomic: CGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: ATTTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTEST: gi|149102607|gb|EE287965.2|EE287965
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTEST: gi|33467969|gb|CF245018.1|CF245018
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: TCTCAGATTTTATTAAG AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTEST: gi|76909352|gb|DV163342.1|DV163342
genomic: TCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTEST: gi|211386247|gb|FL227579.1|FL227579
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTEST: gi|74242217|gb|DT650131.1|DT650131
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTEST: gi|60347261|gb|DN214234.1|DN214234
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: TCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTEST: gi|89759386|gb|DY688239.1|DY688239
genomic: TCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATTTCAGATTTTATTAAG AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTEST: gi|60354297|gb|DN221270.1|DN221270
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
tttccttgaattcttctatctcagaaagaccagaactgattttttttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTTTAAGAGTTACATCATGGCGTGAATCAATACAG
aactgat putative branch site (score: 3)
ctgattttttttttct CT-rich tract
aactgatttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtaggtttatttaattctctttccttgaattcttctatctcagaaagaccagaactgattttttttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATTTTAAGAGTTACATCATGGCGTGAATCAATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA