Sequence
atgc intronic sequence ATGC exonic sequencegtacaaatattttgcacgaccagaaaagctttatcattcatttgggatcatttaccttcacagatagaattcaattataaattgccatctatgttggttttacagGTGGTCACTACTTGATTGCTCTTGGGGAGATATATAGAGTTGCACAGATTTTATACTTATCCTTGCAGTGTTTCAAGACCTGGGTTCTTGCAGATCCTGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G054892_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os12g05100.1 (Oryza sativa), 3'ss of exon 5
gtacaaatattttgcacgaccagaaaagctttatcattcatttgggatcatttaccttcacagatagaattcaattataaattgccatctatgttggttttacagGTGGTCACTACTTGATTGCTCTTGGGGAGATATATAGAGTTGCACAGATTTTATACTTATCCTTGCAGTGTTTCAAGACCTGGGTTCTTGCAGATCCTGG
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gtgcaaaaacttggaacaatgagcagagctt-atcatttcctttc--tcactgatcatttaaaagaagatt-gactataacatgctttct--gctggtttcacagGTGGCCAATTCTTTATTGCTCTTGGGGAGATTTACAGAGTTGCACAGATTCTAAATTTATCCTTGCAGTCCTTCAAGCCCTGGGTTCTTGCTGATCCTGG
upper sequence: GRMZM2G054892_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os11g05100.1 (Oryza sativa), 3'ss of exon 6
gtacaaatattttgcacgaccagaaaagctttatcattcattt-----gggatcatttaccttcacagatagaattcaattataaattgccatctatgttggttttacagGTGGTCACTACTTGATTGCTCTTGGGGAGATATATAGAGTTGCACAGATTTTATACTTATCCTTGCAGTGTTTCAAGACCTGGGTTCTTGCAGATCCTGG
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---gtgggactctgaataatgagcagagctgtataatttgttttttcggtaatcatttgcttgcagaaagatgatcaactaaca---tgccttct--gttggttgcacagGTGCTCATTACTTTATTGCTCTTGGGGAGATCTACAGAGTTGCACAGATCTTACATATATCCATGCTATCTTTCAAGCCTTGGGTTCTTGCAGATCCTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttaccttcacagatagaattcaattataaattgccatctatgttggttttacagGTGGTCACTACTTGATTGCTCTTGGGGAGATATATAGAGTTGCACAGATTTTATACTTATCCTTGCAGTGTTTCAAGACCTGGGTTCTTGCAGATCCTGG
agatagaattcaatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacaaatattttgcacgaccagaaaagctttatcattcatttgggatcatttaccttcacagatagaattcaattataaattgccatctatgttggttttacagGTGGTCACTACTTGATTGCTCTTGGGGAGATATATAGAGTTGCACAGATTTTATACTTATCCTTGCAGTGTTTCAAGACCTGGGTTCTTGCAGATCCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT