1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTGCTTTTGGGGGAAGAGGTGATCGTGCTGATCCTTCTGTGTGGCCGGAGGTTGAAGGGCCGTTAGAGgtaatctcatgtttagtcgaggaaaattagtttggtaagtgactaagtgtaagtgattctcaacttaagtgtgtcttctttgctatcctag
species | Zea mays |
transcript | GRMZM2G054663_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGATCGTGCTGATCCTTCTGTGTGGCCGGAGGTTGAAGGGCCGTTAGAG GTTGTTTTCTTTGAAGGATGGATGCTTGGATTTAAACCTCTTCCAAATGAAEST: gi|211434489|gb|FL073252.1|FL073252
genomic: GTGATCGTGCTGATCCTTCTGTGTGGCCGGAGGTTGAAGGGCCGTTAGAGgtaatctcat ... gctatcctagGTTGTTTTCTTTGAAGGATGGATGCTTGGATTTAAACCTCTTCCAAATGAA
EST: GTGATCGTGCTGATCCTTCTGTGTGGCCGGAGGTTGAAGGGCCGTTAGAG GTTGTTTTCTTTGAAGGATGGATGCTTGGATTTAAACCTCTTCCAAATGAAEST: gi|211396867|gb|FL456752.1|FL456752
genomic: GTGATCGTGCTGATCCTTCTGTGTGGCCGGAGGTTGAAGGGCCGTTAGAGgtaatctcat ... gctatcctagGTTGTTTTCTTTGAAGGATGGATGCTTGGATTTAAACCTCTTCCAAATGAA
EST: GTGATCGTGCTGATCCTTCTGTGTGGCCGGAGGTTGAAGGGCCGTTAGAG GTTGTTTTCTTTGAAGGATGGATGCTTGGATTTAAACCTCTTCCAAATGAA
genomic: GTGATCGTGCTGATCCTTCTGTGTGGCCGGAGGTTGAAGGGCCGTTAGAGgtaatctcat ... gctatcctagGTTGTTTTCTTTGAAGGATGGATGCTTGGATTTAAACCTCTTCCAAATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGCTTTTGGGGGAAGAGGTGATCGTGCTGATCCTTCTGTGTGGCCGGAGGTTGAAGGGCCGTTAGAGgtaatctcatgtttagtcgaggaaaattagtttggtaagtgactaagtgtaagtgattctcaacttaagtgtgtcttctttgctatcctag
- - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG