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gtcattactcgaataatctgactagtggcaagtggtgctactgaactctgtaacaaaccatgaattgcactttctgagtttagtatttggactgcagGCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAG
species | Zea mays |
transcript | GRMZM2G054663_T01 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCGTTATAAAAATAAGAGAACCTAGTTCTGTCTATCAGTGGAGGCTGCAG GCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAGEST: gi|211396865|gb|FL456750.1|FL456750
genomic: TCGTTATAAAAATAAGAGAACCTAGTTCTGTCTATCAGTGGAGGCTGCAGgtcattactc ... tggactgcagGCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAG
EST: TCGTTATAAAAATAAGAGAACCTAGTTCTGTCTATCAGTGGAGGCTGCAG GCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTYTGATGAGGAGEST: gi|211281865|gb|FL463174.1|FL463174
genomic: TCGTTATAAAAATAAGAGAACCTAGTTCTGTCTATCAGTGGAGGCTGCAGgtcattactc ... tggactgcagGCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAG
EST: TCGTTATAAAAATAAGAGACCCTAGTTCTGTCTATCAGTGGAGGCCGCAG GCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAGEST: gi|211396867|gb|FL456752.1|FL456752
genomic: TCGTTATAAAAATAAGAGAACCTAGTTCTGTCTATCAGTGGAGGCTGCAGgtcattactc ... tggactgcagGCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAG
EST: TCGTTATAAAAATAAGAGAACCTAGTTCTGTCTATCAGTGGAGGCTGCAG GCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAGEST: gi|211396866|gb|FL456751.1|FL456751
genomic: TCGTTATAAAAATAAGAGAACCTAGTTCTGTCTATCAGTGGAGGCTGCAGgtcattactc ... tggactgcagGCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAG
EST: TCGTTATAAAAATAAGAGAACCTAGTTCTGTCTATCAGTGGAGGCTGCAG GCGGAGATAGCTATGAGAGCAGATGGAAAACGTGGAATGTCTGATGAGGAG
genomic: TCGTTATAAAAATAAGAGAACCTAGTTCTGTCTATCAGTGGAGGCTGCAGgtcattactc ... tggactgcagGCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAG
gaactctgtaacaaaccatgaattgcactttctgagtttagtatttggactgcagGCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAG
ctgtaac putative branch site (score: 20)
tttagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattactcgaataatctgactagtggcaagtggtgctactgaactctgtaacaaaccatgaattgcactttctgagtttagtatttggactgcagGCGGAGATAGCTATGAGAGCAGATGGAAAACCTGGAATGTCTGATGAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG