1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCATTTCTCCCCTCGATTCTCCGGGCTGATCCGGTCGCTGTCCGGGCCTGTTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccatggccgttcctcctcctcttctcttcttattcatcctgttatgtatgttcagatgttgtcatgtaacccggtgtttctcttacaacctttt...
species | Zea mays |
transcript | GRMZM2G053909_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAG GCAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTCEST: gi|211364076|gb|FL074523.1|FL074523
genomic: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccat ... ctaatttcagGTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTC
EST: TTCGATTGGAGGAGAANCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAG GTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTCEST: gi|76282708|gb|DV022276.1|DV022276
genomic: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccat ... ctaatttcagGTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTC
EST: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAG GTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTCEST: gi|211364075|gb|FL074522.1|FL074522
genomic: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccat ... ctaatttcagGTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTC
EST: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAG GTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTCEST: gi|211364079|gb|FL074526.1|FL074526
genomic: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccat ... ctaatttcagGTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTC
EST: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTTGGAAGAAAG GTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTCEST: gi|71446294|gb|DR827344.1|DR827344
genomic: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccat ... ctaatttcagGTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTC
EST: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAG GTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTCEST: gi|38229661|gb|CF919974.1|CF919974
genomic: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccat ... ctaatttcagGTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTC
EST: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAG GTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTCEST: gi|211364080|gb|FL074527.1|FL074527
genomic: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccat ... ctaatttcagGTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTC
EST: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAG GCAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTCEST: gi|211364077|gb|FL074524.1|FL074524
genomic: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccat ... ctaatttcagGTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTC
EST: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAG GTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTC
genomic: TTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccat ... ctaatttcagGTAATTATCACTGTATCTGACATGGATGAGCACATGGGAAGACGAACAGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATTTCTCCCCTCGATTCTCCGGGCTGATCCGGTCGCTGTCCGGGCCTGTTCGATTGGAGGAGAATCGCCTGGTTTGAAGGAAAGGCTTGGGAAGAAAGgtttggccatggccgttcctcctcctcttctcttcttattcatcctgttatgtatgttcagatgttgtcatgtaacccggtgtttctcttacaacctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA