1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tctgtcccctcacccatgtgcgtttatgtgaatgtttgcatgaaaaatacattatgatatcttaagcagattgctgaactaagcaaaattttcttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACTGTCGGAAGATTGAGAAAGGTCGCTGGCTTTATGCAAGTGGACGTCACCC
species | Zea mays |
transcript | GRMZM2G053027_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGGGCCGGTCCGTCGCCAAGCTGCAATGCGGACACGAGTTCCACCTAG ATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACTEST: gi|211386047|gb|FK987341.1|FK987341
genomic: CGCGGGCCGGTCCGTCGCCAAGCTGCAATGCGGACACGAGTTCCACCTAGgtcagattcc ... ttcttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACT
EST: CGCGGGCCGGTCCGTCGCCAAGCTGCAATGCGGACACGAGTTCCACCTAG ATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACTEST: gi|31360282|gb|CD444639.1|CD444639
genomic: CGCGGGCCGGTCCGTCGCCAAGCTGCAATGCGGACACGAGTTCCACCTAGgtcagattcc ... ttcttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACT
EST: CGCGGGCCGGTCCGTCGCCAAGCTGCAATGCGGACACGAGTTCCACCTAG ATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACT
genomic: CGCGGGCCGGTCCGTCGCCAAGCTGCAATGCGGACACGAGTTCCACCTAGgtcagattcc ... ttcttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACT
aatacattatgatatcttaagcagattgctgaactaagcaaaattttcttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACTGTCGGAAGATTGAGAAAGGTCGCTGGCTTTATGCAAGTGGACGTCACCC
ttttcttgcc CT-rich tract
attatgatatcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtcccctcacccatgtgcgtttatgtgaatgtttgcatgaaaaatacattatgatatcttaagcagattgctgaactaagcaaaattttcttgccagATTGTATTGGGTCTGCATTCAATGCAAAAGGAGCGATGCAATGCCCTAACTGTCGGAAGATTGAGAAAGGTCGCTGGCTTTATGCAAGTGGACGTCACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - catgtgc
- - - - - - - - - - - - - -gtgaatg
- - - - - - - - - - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - - - - - - - aaataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagcaaa