1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTGGACCAGCTTGTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAGgttagcaacctatcatgaataaattgaaatattggtggcatgtgactctttgtgccctaataaaaaaatccaagtattaggatttaacatactttcttgacgcag
species | Zea mays |
transcript | GRMZM2G051050_T01 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TCGAGAGAAGTTCCCTAAATTAG CAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCATEST: gi|32851391|gb|CD991072.1|CD991072
genomic: TCGAGAGAAGTTCCCTAAATTAGgttagcaacc ... cttgacgcagCAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCAT
EST: GGACCAGCTTGTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAG CAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCATEST: gi|19058398|gb|BM737065.1|BM737065
genomic: GGACCAGCTTGTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAGgttagcaacc ... cttgacgcagCAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCAT
EST: CCCTAAATTAG CAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCATEST: gi|22490585|gb|BU050508.1|BU050508
genomic: CCCTAAATTAGgttagcaacc ... cttgacgcagCAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCAT
EST: GCTTGTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAG CAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCATEST: gi|32851141|gb|CD990822.1|CD990822
genomic: GCTTGTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAGgttagcaacc ... cttgacgcagCAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCAT
EST: GGACCAGCTTGTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAG CAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCATEST: gi|32834207|gb|CD973885.1|CD973885
genomic: GGACCAGCTTGTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAGgttagcaacc ... cttgacgcagCAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCAT
EST: GGACCAGCTTGTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAG CAAATCACCTGGATTACCTTGGAEST: gi|19057887|gb|BM736554.1|BM736554
genomic: GGACCAGCTTGTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAGgttagcaacc ... cttgacgcagCAAATCACCTGGATTACCTTGGA
EST: GTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAG CAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCAT
genomic: GTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAGgttagcaacc ... cttgacgcagCAAATCACCTGGATTACCTTGGACTTCAAGTTGCATGGGTTACTGGGCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGACCAGCTTGTTTTAGAGGAGTTAGTTCGAGAGAAGTTCCCTAAATTAGgttagcaacctatcatgaataaattgaaatattggtggcatgtgactctttgtgccctaataaaaaaatccaagtattaggatttaacatactttcttgacgcag
- - - - - - - - AGAGGA
- - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - AGAAGT