1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatggtttcttacgcttcttgtaactctgcctctatgtcaaagctttcgcctagtttcagctgtgattgagatatacaatttctcattcaaatccttcaacgcagATGCATGAAGTACAGTACTTTCTGTTATGCACCCAGAAATCCCAATATCACACCACTGGCAACTGCATCGTTTGGGGACATGGCTGATTCTTCAATTT
species | Zea mays |
transcript | GRMZM2G050825_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTGACAGGGGATTCAAGGAAAAGAACAATATCTTCATCAACGTGGATAG ATGCATGAAGTACAGTACTTTCTGTTATGCACCCAGAAATCCCAATATCACEST: gi|211531420|gb|FL096112.1|FL096112
genomic: TTTGACAGGGGATTCAAGGAAAAGAACAATATCTTCATCAACGTGGATAGgtatggtttc ... ttcaacgcagATGCATGAAGTACAGTACTTTCTGTTATGCACCCAGAAATCCCAATATCAC
EST: TTTGACAGGGGATTCAAGGAAAAGAACAATATCTTCATCAACGTGGATAG ATGCATGAAGTACAGTACTTTCTGTTATGCACCCAGAAATCCCAATATCACEST: gi|211531421|gb|FL096113.1|FL096113
genomic: TTTGACAGGGGATTCAAGGAAAAGAACAATATCTTCATCAACGTGGATAGgtatggtttc ... ttcaacgcagATGCATGAAGTACAGTACTTTCTGTTATGCACCCAGAAATCCCAATATCAC
EST: TTTGACAGGGGATTCAAGGAAAAGAACAATATCTTCATCAACGTGGATAG ATGCATGAAGTACAGTACTTTCTGTTATGCACCCAGAAATCCCAATATCAC
genomic: TTTGACAGGGGATTCAAGGAAAAGAACAATATCTTCATCAACGTGGATAGgtatggtttc ... ttcaacgcagATGCATGAAGTACAGTACTTTCTGTTATGCACCCAGAAATCCCAATATCAC
ctagtttcagctgtgattgagatatacaatttctcattcaaatccttcaacgcagATGCATGAAGTACAGTACTTTCTGTTATGCACCCAGAAATCCCAATATCACACCACTGGCAACTGCATCGTTTGGGGACATGGCTGATTCTTCAATTT
tccttc CT-rich tract
atatacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtttcttacgcttcttgtaactctgcctctatgtcaaagctttcgcctagtttcagctgtgattgagatatacaatttctcattcaaatccttcaacgcagATGCATGAAGTACAGTACTTTCTGTTATGCACCCAGAAATCCCAATATCACACCACTGGCAACTGCATCGTTTGGGGACATGGCTGATTCTTCAATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT