Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTTCGATTTGACATGAGGCTAGCCAATGAGGATGTTGGGATGCTTGCATTTACCTCGGAACAAATTCCAGCACCTTTCCTTCTCCCTAAAATGgtaatgtcattaaatcatatattagtttctgtttttttatgatgacctgtgttattgtaaacttcattattgtagcattgtcaaagctatttgggggttt...

Basic information

species Zea mays
transcript GRMZM2G049849_T02
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049849_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os03g31400.1 (Oryza sativa), 5'ss of exon 11
ATTGTTCGATTTGACATGAGGCTAGCCAATGAGGATGTTGGGATGCTTGCATTTACCTCGGAACAAATTCCAGCACCTTTCCTTCTCCCTAAAATGgtaatgtcattaaatcatatatt-agtttctgtttttttatgatgacctgtgttattgtaaacttcattattgtagcattgtcaaagctatttgggggttt--
 |||||||||||||||||| |||||| ||||||||||||||||||||||| || || || || || ||||||||||||||||| || ||| |||||||||| |||| ||| |||||||| | ||||  |   | ||| |      || | ||| ||   || |||| |     |   ||||  |||   ||   |    
GTTGTTCGATTTGACATGAAGCTAGCAAATGAGGATGTTGGGATGCTTGCTTTCACGTCAGAGCAGATTCCAGCACCTTTCCTCCTTCCTGAAATGgtaatatcat-aaaccatatatttaatttccataaatatataaaactaagtttaatttta--ttttattactaacaaagcttcaactctacacggacttaatt