1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ttgagtttctgcctattcttgcagccaacccttatgttgtgcaacactgctgctactgatactctttgtttttaacctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
species | Zea mays |
transcript | GRMZM2G049347_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATG-CTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAGEST: gi|211319263|gb|FL042436.1|FL042436
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
EST: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAGEST: gi|148948354|gb|EC893872.2|EC893872
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
EST: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAGEST: gi|149108271|gb|EE292611.2|EE292611
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
EST: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAGEST: gi|148933622|gb|EC877505.2|EC877505
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
EST: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAGEST: gi|211319255|gb|FL042428.1|FL042428
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
EST: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATGGCTGAATCAAEST: gi|149096357|gb|EE182083.2|EE182083
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAA
EST: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAGEST: gi|148971875|gb|EE022637.2|EE022637
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
EST: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAGEST: gi|149000007|gb|EE037098.2|EE037098
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
EST: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAGEST: gi|211319262|gb|FL042435.1|FL042435
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
EST: TCCCTCCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAGEST: gi|149060778|gb|EE157228.2|EE157228
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
EST: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAG CTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
genomic: TCCCACCCGAGTTTTATCCATCATGGGTTTCATTCACACAAAAGCAGAAGttgagtttct ... acctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
ccttatgttgtgcaacactgctgctactgatactctttgtttttaacctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
ttttaac putative branch site (score: 171)
tttgtttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagtttctgcctattcttgcagccaacccttatgttgtgcaacactgctgctactgatactctttgtttttaacctgtgcagCTTAAATGGCTGAATCAAGAGCTGACAAAAATCTGGCCATTTGTCAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA