1 5' 3' | 2 5' 3' | 3 5' 3' |
TGAGCGGCGGATCCTGCCCGGCCGTGCCATCCTGGCGACGATGACAGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacgacctgtgcccgcttcctatgccttgcgtgcgttcggttctcggtccggccgatccgccgcggcactcgactccgcacgctgccagaccggc...
species | Zea mays |
transcript | GRMZM2G048455_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCGTAAGCGGGCGGCGGACGACCGCGNNNNNNNGGCCCCTACTCCCGAG GTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCCEST: gi|76925341|gb|DV170391.1|DV170391
genomic: AGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacga ... ctcctactagGTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
EST: AGCGTAAGCGGGCGGCGGACGACCGCGNNNNNNNGGCCCCTACTCCCGAG GTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCCEST: gi|148944537|gb|EC889659.2|EC889659
genomic: AGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacga ... ctcctactagGTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
EST: AGCGTAAGCGGGCGGCGGACGACCGCGNNNNNNNGGCCCCTACTCCCGAG GTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCCEST: gi|148976341|gb|EE025924.2|EE025924
genomic: AGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacga ... ctcctactagGTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
EST: AGCGTAAGCGGGCGGCGGACGACCGCGNNNNNNNGGCCCCTACTCCCGAG GTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCCEST: gi|76287945|gb|DV027513.1|DV027513
genomic: AGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacga ... ctcctactagGTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
EST: AGCGTAAGCGGGCGGCGGACGACCGCGNNNNNNNGGCCCCTACTCCCGAG GTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCCEST: gi|88756056|gb|DY540197.1|DY540197
genomic: AGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacga ... ctcctactagGTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
EST: AGCGTAAGCGGGCGGCGGACGACCGCGNNNNNNNGGCCCCTACTCCCGAG GTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCCEST: gi|71757469|gb|DR955406.1|DR955406
genomic: AGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacga ... ctcctactagGTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
EST: AGCGTAAGCGGGCGGCGGACGACCGCGNNNNNNNGGCCCCTACTCCCGAG GTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCCEST: gi|76012144|gb|DT939314.1|DT939314
genomic: AGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacga ... ctcctactagGTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
EST: AGCGTAAGCGGGCGGCGGACGACCGCGNNNNNNNGGCCCCTACTCCCGAG GTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCCEST: gi|78109405|gb|DV527821.1|DV527821
genomic: AGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacga ... ctcctactagGTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
EST: AGCGTAAGCGGGCGGCGGACGACCGCGNNNNNNNGGCCCCTACTCCCGAG GTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCCEST: gi|31353430|gb|CD437787.1|CD437787
genomic: AGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacga ... ctcctactagGTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
EST: AGCGTAAGCGGGCGGCGGACGACCGCGNNNNNNNGGCCCCTACTCCCGAG GTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
genomic: AGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacga ... ctcctactagGTCATTGGCGTGTGCTCCTTGGCAGAAAATGGCGATGATGGTGGATCCCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGCGGCGGATCCTGCCCGGCCGTGCCATCCTGGCGACGATGACAGCGTAAGCGGGCGGCGGACGACCGCGCCCCCCCGGCCCCTACTCCCGAGgtacctacgacctgtgcccgcttcctatgccttgcgtgcgttcggttctcggtccggccgatccgccgcggcactcgactccgcacgctgccagaccggc
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