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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgcatcttattactacagtttccactcgcatcacaggctcacttcactgccacagTGGCACCTCCGTCTAGGAACCGTCGCAGTCCATGGGCACGGCGGCGTCTTCCACCCGCTTCCGGCACCTGCGCGCCGCCTTGATGGCCAGCAGGGTGTCG

Basic information

species Zea mays
transcript GRMZM2G042532_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211200037|gb|FL195476.1|FL195476
EST:     GCTCAAGACAACCCGCGCTAACTTCTTTTTACAGCAATCAGCGCTCAGCG                         TGGCACCTCCGTCTAGGAACCGTCGCAGTCCATGGGCACGGCGGCGTCTTC
genomic: GCTCAAGACAACCCGCGCTAACTTCTTTTTACAGCAATCAGCGCTCAGCGgtactgcatc ... actgccacagTGGCACCTCCGTCTAGGAACCGTCGCAGTCCATGGGCACGGCGGCGTCTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcatcttattactacagtttccactcgcatcacaggctcacttcactgccacagTGGCACCTCCGTCTAGGAACCGTCGCAGTCCATGGGCACGGCGGCGTCTTCCACCCGCTTCCGGCACCTGCGCGCCGCCTTGATGGCCAGCAGGGTGTCG
                                   ggctcac  putative branch site (score: 3)
                                         cttcact  CT-rich tract
      ttattacta  TA-rich tract