1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtttgtgcttgagatgaaatgatgatcctttcctttgatgacaactgatgatgatatgctgttgctgatcagGATTTCGGTGGAAGCATACCACCAGCAGCGTCATCGGCATTAGTCAAGCTGACAAACCGGCTCAACTTCCTGAAAGAACGGAGGGCGCTGCTGGCAAGCG
species | Zea mays |
transcript | GRMZM2G042084_T01 |
intron # | 23 |
splice site | 3' |
intron type | U2 |
EST: ATTCAAATAGCCCATTGATAAGAGGGCTTCATGGATCCAGCAGACTAGAG GATTTCGGTGGAAGCATACCACCAGCAGEST: gi|5670888|gb|AI932151.1|AI932151
genomic: ATTCAAATAGCCCATTGATAAGAGGGCTTCATGGATCCAGCAGACTAGAGgtttgtgctt ... tgctgatcagGATTTCGGTGGAAGCATACCACCAGCAG
EST: CATGGATCCAGCAGACTAGAG GATTTCGGTGGAAGCATACCACCAGCAGCGTCATCGGCATTAGTCAAGCTGEST: gi|166473132|gb|EG247052.1|EG247052
genomic: CATGGATCCAGCAGACTAGAGgtttgtgctt ... tgctgatcagGATTTCGGTGGAAGCATACCACCAGCAGCGTCATCGGCATTAGTCAAGCTG
EST: ATTCAAATAGCCCATTGATAAGAGGGCTTCATGGATCCAGCAGACTAGAG GATTTCGGTGGAAGCATACCACCAGCAG
genomic: ATTCAAATAGCCCATTGATAAGAGGGCTTCATGGATCCAGCAGACTAGAGgtttgtgctt ... tgctgatcagGATTTCGGTGGAAGCATACCACCAGCAG
aatgatgatcctttcctttgatgacaactgatgatgatatgctgttgctgatcagGATTTCGGTGGAAGCATACCACCAGCAGCGTCATCGGCATTAGTCAAGCTGACAAACCGGCTCAACTTCCTGAAAGAACGGAGGGCGCTGCTGGCAAGCG
aactgat putative branch site (score: 3)
atgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgcttgagatgaaatgatgatcctttcctttgatgacaactgatgatgatatgctgttgctgatcagGATTTCGGTGGAAGCATACCACCAGCAGCGTCATCGGCATTAGTCAAGCTGACAAACCGGCTCAACTTCCTGAAAGAACGGAGGGCGCTGCTGGCAAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT