Sequence
atgc intronic sequence ATGC exonic sequenceGAAGACCCTGGTGTTCTACATCGGCAGGGCGCCACACGGCAAGAAGACTGACTGGATCATGCACGAGTACCGCCTGGACCAAGAGAACGTTGAGATTCAGgtaataataaaggggcctttatatatatatcctgatctagtcctgtaaataccgttctttattttgtttcttgctagcgatcgagctgctgcaatgcaaagtgactcaaatcctgatatggtctacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G041746_T01 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g33940.1 (Oryza sativa), 5'ss of exon 3
GAAGACCCTGGTGTTCTACATCGGCAGGGCGCCACACGGCAAGAAGACTGACTGGATCATGCACGAGTACCGCCTGGACCAAGAGAACGTTGAGATTCAGgtaataataaaggggcctttatatatatatcctgatctagtcctgtaaataccgttctttattttgtttcttgctagcgatcgagctgctgcaatgcaaagtgactcaaatcctgatatggtctacag
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GAAGACCCTCGTCTTCTACGTCGGCAGGGCGCCCCACGGCAAGAAGACCGACTGGATCATGCACGAGTACCGCCTCGACCAAGACAACGTCGATGTCCAGgtatatatatatatatatatatatatatatt-tgacat----cagcaaaaaccatatgcaacattaa-----gttcacgatatacatacttagcatccatgaaatgccaa------------------
upper sequence: GRMZM2G041746_T01 (Zea mays), 5'ss of exon 3
lower sequence: PP1S77_42V6.1 (Physcomitrella patens), 5'ss of exon 2
GAAGACCCTGGTGTTCTACATCGGCAGGGCGCCACACGGCAAGAAGACTGACTGGATCATGCACGAGTACCGCCTGGACCAAGAGAACGTTGAGATTCAGgtaataataaaggggcctttatatatatatcctgatctagtcctgtaaataccgttctttattttgtttcttgctagcgatcgagctgctgcaatgcaaagtgactcaaatcctgatatggtctacag--
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---------GGTGTTCTACAAGGGCCGGGCGCCTCATGGCCAGAAGACCGACTGGATCATGCACGAGTTCCGTCTAGACGACGGCAAC---------CAGGCATTC----CGCGGTTTCGATgtacgt-cgccgttccacatttccaaccccctcacagtgttc-gtgtcc--ctttcgatcag--tgttgcattaccagaaagcttgcctcg-gagatgctcc-cagat
upper sequence: GRMZM2G041746_T01 (Zea mays), 5'ss of exon 3
lower sequence: EFJ22020 (Selaginella moellendorffii), 5'ss of exon 2
GAAGACCCTGGTGTTCTACATCGGCAGGGCGCCACACGGCAAGAAGACTGACTGGATCATGCACGAGTACCGCCTGGACCAAGAGAACGTTGAGATTCA-Ggtaataataaag--gggcctttatatatatatcctgatctagtcctgtaaataccgttctttattttgtttcttgctagcgatcgagctgctgcaatgcaaagtgactcaaatcctgatatggtctacag
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------------TTTCTACAGAGGGAGAGCTCCAAACGGGCAGAAGACCGACTGGATCATGCACGAGTACAGGCTCGAGGAGGACATCAGCAGCAGTGGCAGCAACAACAATgtaagatcctctcgtacttggca-gcttttttcttctataaccctcttatttttttggttttggct-----ctgaaatgcag-------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93015148|gb|EB640668.1|EB640668EST: ACTGGATCATGCACGAGTACCGCCTGGACCAAGAGAACGTTGAGATTCAG GAAGATGGTTGGGTGGTGTGTAGGGTTTTCAAGAAGAAGAGCTATCACCAG
genomic: ACTGGATCATGCACGAGTACCGCCTGGACCAAGAGAACGTTGAGATTCAGgtaataataa ... tggtctacagGAAGATGGTTGGGTGGTGTGTAGGGTTTTCAAGAAGAAGAGCTATCACCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGACCCTGGTGTTCTACATCGGCAGGGCGCCACACGGCAAGAAGACTGACTGGATCATGCACGAGTACCGCCTGGACCAAGAGAACGTTGAGATTCAGgtaataataaaggggcctttatatatatatcctgatctagtcctgtaaataccgttctttattttgtttcttgctagcgatcgagctgctgcaatgcaaagtgactcaaatcctgatatggtctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA