1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttgcatggtgtggccaagagtttgtcctcttgtttgcctcgttggtgggtcatgcatgttcatctctagactgacgtgctcacttgctgacatacctagGTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTTGTCCGGCGGCGGCGGCATGGACGCGTCAATGGACAACTCGTGGCGCCTG
species | Zea mays |
transcript | GRMZM2G041223_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCTGGTGGAGGGAGCAAAGATCTCAG GTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTTEST: gi|12046498|gb|BF728637.1|BF728637
genomic: TGCTGCTGGTGGAGGGAGCAAAGATCTCAGgtgagcttca ... acatacctagGTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTT
EST: TGCCGCTGCTTACGCGACTGCGTGCGTGGTGGAGGGAGCAAAGATCTCAG GTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTTEST: gi|6973656|gb|AW438392.1|AW438392
genomic: TGCCGCTGCTTACGCGACTGC-TGC-TGGTGGAGGGAGCAAAGATCTCAGgtgagcttca ... acatacctagGTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTT
EST: AGTGCCGCTGCTTACGCGACTGCTGCTGGTGGAGGGAGCAAAGATCTCAG GTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTT
genomic: AGTGCCGCTGCTTACGCGACTGCTGCTGGTGGAGGGAGCAAAGATCTCAGgtgagcttca ... acatacctagGTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTT
gtgggtcatgcatgttcatctctagactgacgtgctcacttgctgacatacctagGTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTTGTCCGGCGGCGGCGGCATGGACGCGTCAATGGACAACTCGTGGCGCCTG
tgctgac putative branch site (score: 14)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgcatggtgtggccaagagtttgtcctcttgtttgcctcgttggtgggtcatgcatgttcatctctagactgacgtgctcacttgctgacatacctagGTACTCTGCCTACGGGGTGAAGTCTCTGTCGGACGAGCACAGCCAGCTCTTGTCCGGCGGCGGCGGCATGGACGCGTCAATGGACAACTCGTGGCGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- tgcatgg
- - - - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - -gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgctg