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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCATCGCGGCCCGTTACGCCGGCACCCTATTGCCTTATCCATCCTCTGCCGACGTCGGCGCCTTCGACTCGTATGTCGGCGCGAGACGATCCGCGGAAGgtgagagctgccctcttcctgttttggttggtatgaggagtttcccgtgcgtgttcatcggacaatgctgccgccgatgcatgtgtgatttgtttctttg...

Basic information

species Zea mays
transcript GRMZM2G039889_T06
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211416501|gb|FL082404.1|FL082404
EST:     CGACGTCGGCGCCTTCGACTCGTATGTCGGCGCGAGACGATCCGCGGAAG                         GCCCCGAATGTTGAAGATTCTTATCCTGAGCGACCAGGGGAACCAGATTGT
genomic: CGACGTCGGCGCCTTCGACTCGTATGTCGGCGCGAGACGATCCGCGGAAGgtgagagctg ... ccttttgcagGCCCCGAATGTTGAAGATTCTTATCCTGAGCGACCAGGGGAACCAGATTGT
EST: gi|76910227|gb|DV163763.1|DV163763
EST:     CGACGTCGGCGCCTTCGACTCGTATGTCGGCGCGAGACGATCCGCGGAAG                         GCCCCGAATGTTGAAGATTCTTATCCTGAGCGACCAGGGGAACCAGATTGT
genomic: CGACGTCGGCGCCTTCGACTCGTATGTCGGCGCGAGACGATCCGCGGAAGgtgagagctg ... ccttttgcagGCCCCGAATGTTGAAGATTCTTATCCTGAGCGACCAGGGGAACCAGATTGT