1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaagaagaagaagaagcaaacagcatgccccaatttcctgtaactgtaagctataattaccgctgaattatctgatctgcatttatattgtcacttgcagAGATCAGGAACGGTCCCTGCGGTTGGCCTGGTTCACGCTCCATTCTCGCTGCTTCCAGCGCGTTTTCCGGCATTGTTCTTCAATCAAGCATGCGAGCTGG
species | Zea mays |
transcript | GRMZM2G038492_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTGTGGTGCGCCGTCCACGGGCTCGTCGTCGGAGATCGCGCCAACCAG AGATCAGGAACGGTCCCTGCGGTTGGCCTGGTTCACGCTCCATTCTCCCTGEST: gi|211375420|gb|FL332797.1|FL332797
genomic: CCGTGTGGTGCGCCGTCCACGGGCTCGTCATCGGAGATCGCGCCAACCAGgtacgccaca ... tcacttgcagAGATCAGGAACGGTCCCTGCGGTTGGCCTGGTTCACGCTCCATTCTCGCTG
EST: CCGTGTGGTGCGCCGTCCACGGGCTCGTCATCGGAGATCGCGCCAACCAG AGATCAGGAACGGTCCCTGCGGTTGGCCTGGTTCACGCTCCATTCTCGCTGEST: gi|19272476|gb|BM888732.1|BM888732
genomic: CCGTGTGGTGCGCCGTCCACGGGCTCGTCATCGGAGATCGCGCCAACCAGgtacgccaca ... tcacttgcagAGATCAGGAACGGTCCCTGCGGTTGGCCTGGTTCACGCTCCATTCTCGCTG
EST: ACGGGCTCGTCGTCGGAGATCGCGCCAACCAG AGATCAGGAACGGTTCCTGGGGTTGGCCTGGTTCACGCTCCATTCTCGCTGEST: gi|76012677|gb|DT939847.1|DT939847
genomic: ACGGGCTCGTCATCGGAGATCGCGCCAACCAGgtacgccaca ... tcacttgcagAGATCAGGAACGGTCCCTGCGGTTGGCCTGGTTCACGCTCCATTCTCGCTG
EST: CCGTGTGGTGCGCCGTCCACGGGCTCGTCATCGGAGATCGCGCCAACCAG AGATCAGGAACGGTCCCTGCGGTTGGCCTGGTTCACGCTCCATTCTCGCTG
genomic: CCGTGTGGTGCGCCGTCCACGGGCTCGTCATCGGAGATCGCGCCAACCAGgtacgccaca ... tcacttgcagAGATCAGGAACGGTCCCTGCGGTTGGCCTGGTTCACGCTCCATTCTCGCTG
gtaagctataattaccgctgaattatctgatctgcatttatattgtcacttgcagAGATCAGGAACGGTCCCTGCGGTTGGCCTGGTTCACGCTCCATTCTCGCTGCTTCCAGCGCGTTTTCCGGCATTGTTCTTCAATCAAGCATGCGAGCTGG
atctgat putative branch site (score: 10)
atttatattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagaagaagaagaagcaaacagcatgccccaatttcctgtaactgtaagctataattaccgctgaattatctgatctgcatttatattgtcacttgcagAGATCAGGAACGGTCCCTGCGGTTGGCCTGGTTCACGCTCCATTCTCGCTGCTTCCAGCGCGTTTTCCGGCATTGTTCTTCAATCAAGCATGCGAGCTGG
-aagaagaa
- - - - - -agaagca
- - - - - - - - - - -agcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcatt