1 5' 3' | 2 5' 3' | 3 5' 3' |
gtattccgaacgcacacgaggttctcaaattaagagcttactaactatattgtttcagtaattttgtgattcctgtatttttagGGGCTGGAGAAGAGGTGGAGGTGAGAACGGAGCAGATGCAGTTCGAGCAACTCCCTGCTCTGGCCTCCGAGGTGGCGAGAGTAGAGATGGTCAGAGAGTA
species | Zea mays |
transcript | GRMZM2G036418_T02 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGTGGCGTCCGCGGCCGGCTTGGTGCCCTCAAAGCATCCGGGTCAACAG GGGCTGGAGAAGAGGTGGAGGTGAGAACGGAGCAGATGCAGTTCGAGCAACEST: gi|76288801|gb|DV028369.1|DV028369
genomic: CCGTGGCGTCCGCGGCCGGCTTGGTGCCCTCAAAGCATCCGGGTCAACAGgtattccgaa ... gtatttttagGGGCTGGAGAAGAGGTGGAGGTGAGAACGGAGCAGATGCAGTTCGAGCAAC
EST: CCGTGGCGTCCGCGGCCGGCTTGGTGCCCTCAAAGCATCCGGGTCAACAG GGGCTGGAGAAGAGGTGGAGGTGAGAACGGAGCAGATGCAGTTCGAGCAAC
genomic: CCGTGGCGTCCGCGGCCGGCTTGGTGCCCTCAAAGCATCCGGGTCAACAGgtattccgaa ... gtatttttagGGGCTGGAGAAGAGGTGGAGGTGAGAACGGAGCAGATGCAGTTCGAGCAAC
ttaagagcttactaactatattgtttcagtaattttgtgattcctgtatttttagGGGCTGGAGAAGAGGTGGAGGTGAGAACGGAGCAGATGCAGTTCGAGCAACTCCCTGCTCTGGCCTCCGAGGTGGCGAGAGTAGAGATGGTCAGAGAGTA
tactaac putative branch site (score: 42)
ttcctgt putative PPT
ttactaactatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattccgaacgcacacgaggttctcaaattaagagcttactaactatattgtttcagtaattttgtgattcctgtatttttagGGGCTGGAGAAGAGGTGGAGGTGAGAACGGAGCAGATGCAGTTCGAGCAACTCCCTGCTCTGGCCTCCGAGGTGGCGAGAGTAGAGATGGTCAGAGAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG